Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0560 ATGCCTTTCATAGATCTTAATGAAGACCAAAACCACCAAGCCTCTTCTTCCTCTTCTTCTCTTTCATTTAATCCTATTCTCCTCAACCCACATGATCAGGATCATGCAGGATCTTACTTATTTGAACCAAAGCCCTTACAAACTGATCATGAAGAGGCTGCGAAGATTGTTCCATATAGTGGATCATGGGATAATCTAGGAGAAGAAAAGGATGATACGAAGAGGGGCTTGAAACTGAGAGTATGGAAGAAAGGAGCAGGAGATAGGGATGACGAGAATTTAAATCATCAAGGTGATCGTGAGGAGGATGATTCTGGGAAGTGGATGTCTTCGAAGATGAGGATGATGAGGAAGATGATGGTTTCGGATCAAACGGGCTGCGATACCTCTAGGCAGAAGTTTGAAGATCATATTCAGAAGCAACAGTCATTGTCTCCTCTAGGAACTGATAATAGCAGCAGCAATAGTTCTCCAATCTCAAACAGTAATAATATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAAACACCTCTATGGAGGAGTGGACCAAGAGGTCCTAAGTCACTTTGCAACGCCTGTGGAATTCGACAAAGGAAAGCAAGACGAGCCATGGCTGCAGCTGCAGCAACATCAGCAAATGGCGCAGTTATGGCAGTTGAGAGATCTTCTGTGAAGGGAAACAAGCTGCACAGAAAAGAGAAGAAGAACTCGAAAATCGAGTTGAAGAAGAAGCGCAAGATTGATCATGATGGCGAAGAAGCCAAGCCGTCACCAAGAAAGAAGTTTGGTTTTGAGGATTTCACAATAAGCTTGAGTAAGAACTTGGCTCTACAAGTGTTCCCTCAGGACGAGAAGGAGGCTGCCATCCTGCTCATGGCTTTATCTTGTGGCCTAGTTCATGGATGA 912 0.4408 MPFIDLNEDQNHQASSSSSSLSFNPILLNPHDQDHAGSYLFEPKPLQTDHEEAAKIVPYSGSWDNLGEEKDDTKRGLKLRVWKKGAGDRDDENLNHQGDREEDDSGKWMSSKMRMMRKMMVSDQTGCDTSRQKFEDHIQKQQSLSPLGTDNSSSNSSPISNSNNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAATSANGAVMAVERSSVKGNKLHRKEKKNSKIELKKKRKIDHDGEEAKPSPRKKFGFEDFTISLSKNLALQVFPQDEKEAAILLMALSCGLVHG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0560 303 MobiDBLite consensus disorder prediction 125 163 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 230 244 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 139 163 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 245 261 - -
Glsi13g0560 303 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Glsi13g0560 303 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Glsi13g0560 303 FunFam GATA transcription factor 21 164 251 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 8 23 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 87 108 - -
Glsi13g0560 303 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 10 303 - -
Glsi13g0560 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 205 - -
Glsi13g0560 303 MobiDBLite consensus disorder prediction 226 261 - -
Glsi13g0560 303 ProSiteProfiles GATA-type zinc finger domain profile. 168 200 IPR000679 GO:0006355|GO:0043565
Glsi13g0560 303 CDD ZnF_GATA 169 197 IPR000679 GO:0006355|GO:0043565
Glsi13g0560 303 Gene3D - 166 257 IPR013088 GO:0006355|GO:0008270
Glsi13g0560 303 MobiDBLite consensus disorder prediction 1 23 - -
Glsi13g0560 303 SMART GATA_3 164 215 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0560 Glsi-ChrGlsi13 24197798 24199164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0560 77 303 C2C2-Gata Transcription Factor Family AT4G26150 39.759 3.17e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi13g0560 GATA 3.8e-17 CL0167