Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0552 ATGGCTCCTAGAATCCTACTGTGCGGCGACGTTTTGGGCCGCCTCAACCAGCTCTTCAAGCGTGTCTCATCGGTCAACAAATCGGCTGGTCCATTCGATGCGCTTTTCTGCGTGGGTCAATTCTTCCCCGACTCGCCGGACCAGCTCGATGAGTTCATGGGTTACATTGAGGGTCAAACCCAGTTTCCTCTTCCGACTTACTTCATCGGCGACTATGGCGTCGGTGCCGCTAAAGTTTTATTGGCAACTTCTAAGGACTCGGCGAACCGTGGCTTCAAGATGGACGGCTTGAAGGTTTGCGAGAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCACCATGCTGGGGTTATCTATGGCCTATTTATCTGGTAGGCAATCACCGGAAGTACAACAGTTTGGAACTTACAGTCAAGATGATGTTGATGCTTTGCGAGCAATAGCTGAGGAACCTGGAATAATTGATTTTGGAGTCACAAATAGAGCAACTACATCAGACATTCCAGCTGGAATCTCTGATTCCCTAGGAAGTGATACAACTGTTTCAGAGTTAGTAGGAGAAATTAAGCCACGTTATCATATTGCAGGTACAAAAGGTATATACTATGCCCGTGAACCTTATTCTAACGTTGAAGCAGTGCATGTGACTCGTTTCATAGGGCTTGCTTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACGCCTGCATCCACCATGTCTTCTTCTGAGATTGCCATGAAAACCGCAAACACCACCTTATCACCGTATACATTTGTAGAGAAAAGAACTTCTCCAAAGGAAGCCACAAAGAGATCCAATGATGGTGTCTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGGCAGAAACATGGGGCTGGAGATGGTGATAAGTTGTGTTTTAAATTTGTATCTTCTGGCTCTTGTCCACGGGGAGAAAAGTGCACTTTTCGACATGATGTAGATGCAAGGGAACAGTCTTTGAGAGGTGTTTGTTTTGATTTTTTAAACAAGGGGAAATGTGAAAGGGGTCCAGATTGCAGCTTTATGCACAGCTTGCAGGATGAAGGTGAGAATTACCCTCGCAGGAGGCGTGGATCTGAAAATACTGGGTCTAGCAGATCAAAGGAGTGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTGATCATAAGCATTGCAGAAAATTACTACTGTGCATTGGCTAAAGGCCCACTTGTTGAAGACCATGTGCTGATAATACCTGTTGAGCATTTGCCAAGTACTTTATCTCTGTCAGCAGAATCTGAAGCTGAGCTTAATAAATTCCAGAACAGTCTCAGGATGTACTGCAAGAGTCAAGGAAAGCAAGCCATCTTTTTTGAGTGGGCTTCAAGACATAGTACACATGCCAACCTTCAGGTCATTCCTATCCCATCTTCCAAAGCAAACATGGCTGAAAAAGTATTCAATTTGGCAGCAGAAAAGATGGGATTTAAATTTGAGGTTAAGAAGTTTGAAAGCAGTTCTGATGGAAGAAAATTTTTGAGGACACAAATTGATGGAAATTCAAGTTTGTTCTATGTTGAACTCCCGGGAAGTACGGTACTGTTGCATCTGGTTGAAGATAATGAGAGATTTCCTGCCCAGTTTGGACGTGAGGTTCTTTCAGGATTGCTCAATATGGCAGATAAGGCAGATTGGAGGAACTGCAAATATAGCAAAGAAGAAGAAACGAAAATGACTGAAGATTTCAAGAGTCGATTTCAACAATATGATCCAAATTGTTGA 1797 0.4313 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPDSPDQLDEFMGYIEGQTQFPLPTYFIGDYGVGAAKVLLATSKDSANRGFKMDGLKVCENLYWLKGSGKFTMLGLSMAYLSGRQSPEVQQFGTYSQDDVDALRAIAEEPGIIDFGVTNRATTSDIPAGISDSLGSDTTVSELVGEIKPRYHIAGTKGIYYAREPYSNVEAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSSEIAMKTANTTLSPYTFVEKRTSPKEATKRSNDGVSDSQYWRYDVSQKRQKHGAGDGDKLCFKFVSSGSCPRGEKCTFRHDVDAREQSLRGVCFDFLNKGKCERGPDCSFMHSLQDEGENYPRRRRGSENTGSSRSKECWFCLSSPNVESHLIISIAENYYCALAKGPLVEDHVLIIPVEHLPSTLSLSAESEAELNKFQNSLRMYCKSQGKQAIFFEWASRHSTHANLQVIPIPSSKANMAEKVFNLAAEKMGFKFEVKKFESSSDGRKFLRTQIDGNSSLFYVELPGSTVLLHLVEDNERFPAQFGREVLSGLLNMADKADWRNCKYSKEEETKMTEDFKSRFQQYDPNC 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0552 598 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Glsi13g0552 598 Gene3D - 290 362 - -
Glsi13g0552 598 FunFam Zinc finger CCCH domain-containing protein 59 361 487 - -
Glsi13g0552 598 CDD MPP_CWF19_N 6 224 - -
Glsi13g0552 598 Pfam Protein similar to CwfJ C-terminus 2 510 595 IPR006767 -
Glsi13g0552 598 Pfam Protein similar to CwfJ C-terminus 1 380 492 IPR006768 -
Glsi13g0552 598 SUPERFAMILY HIT-like 380 487 IPR036265 -
Glsi13g0552 598 SUPERFAMILY CCCH zinc finger 305 330 IPR036855 GO:0046872
Glsi13g0552 598 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 597 IPR040194 -
Glsi13g0552 598 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Glsi13g0552 598 SMART c3hfinal6 303 328 IPR000571 GO:0046872
Glsi13g0552 598 SMART c3hfinal6 335 360 IPR000571 GO:0046872
Glsi13g0552 598 SUPERFAMILY CCCH zinc finger 338 362 IPR036855 GO:0046872
Glsi13g0552 598 Gene3D - 363 505 IPR036265 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi13g0552 CwfJ_C_1 8.2e-40 CL0265