Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0544 ATGGTGGTTGCTCATGGTGGCTGCAGTGAAAGCGGTGGTAGTGACGGCTGTGGCGGGTCAGAATTTATTAATAGAGTGCTGTTGAAGAAAGCTATGGTGGTGGAAGCGGAGAATGCGAACCCGAAAGCCATGGGAGAAGTAGCAAGAGTCAAATCAGAGGAAGTAATGGTGTTTGATGATGAGAACGCTCCTTCAAATTCTGGTGGGTCCTGTGATGTCGAAGATGAAGCCCAGGACGACGTTTTCAGTGAGGATTCAGAGAGGAAGACCTCGGAAGTAGTGACGATGGAAGAGGGGTTTATCGGAGTGGTTCCACCGTTTCATGTGAAACAGGAGGAAGAGGAAGCGGTGGATGTTGTCGTCGACGGCGCCGGGGCTAATGGGTCGTCGTCTGCCTCGTCGATCGACTTGCCAAAACCAATGGAAGGGTTGCACGACATGGGTCCGCCTCCGTTCCTCAGGAAGACCTTCGAAATGGTGGAGGACCCGGAGACCGACCCGATTGTGTCCTGGAGCGAAGCTCGTGATAGCTTTATCGTTTGGGATTCTCACGAATTCTCCAAAATTCTTCTCCCTAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATTCGTCAGCTCAACACTTACGGATTTCGGAAGATTGATTCTGACCGTTGGGAGTTTGCAAATGAAGGATTTCAGGGAGGAAAGAAACATTTGCTGAAGAACATCAGGAGAAGAAGCAAGTATAACAAGCTGCAACAAGGAGCATTCAGTTCAATGAAGCCTGATCTGGAGGCTGAAGTTGACAAACTGAAGAAAGATCAGAACATACTGAAAGTGGAGATTCTGAGGCTGAGACAGCAGCAGGAGAATTCACAGGTTCAGCTCATAAATGTTCAAGAACGAGTTCGGTCTGCTGAGTTAAAGCAGTATCAGATGCTGTTTTTCCTGTCCAAAATGGCCAGAAAGCCAACCTGTATTCAGCAGTTAATCCAGAAGTTAAAGCGAAAAAGAGAGCTTGATGGGGGTGAGATTGGTAAGAGACCCAGATTGCTTGGAACCCAGTGCCCTGTAAGCTTCCCTAAGGCCATGGACACCATCCCTGATGTTGATTATAGACACCAATCAGAGCTTCCTGGATTCCTATCTGAAACTGTGATCACTAGCAGAACGGAGACCCCTGAACCCTCTCCTCTGGAAGATGAATTGTGCAGCCCTATACAAGGCTTAAGGGCCAATGCTTCCAGAGCAAGTGCCCATGATGTATCCTCTGCTTGCTGTATTATGTCAGAGAAACTAATGGAAGAGAACTCTGCTGTTGATGAAGAACTAGATCTGATTTGGTTGGATCTGCAAGTGGATTGGTGGGGCAAACTGGTTGTATCTGATCAATCAATTCCTCGAGAAGATTGCAAGAGTGAGCTTATGCAGAAGCCGCAGCAACAGCAACGAAGAGAAAACTATTTTTGGGCTCTTTCAAAATTACCAACTTGA 1479 0.4726 MVVAHGGCSESGGSDGCGGSEFINRVLLKKAMVVEAENANPKAMGEVARVKSEEVMVFDDENAPSNSGGSCDVEDEAQDDVFSEDSERKTSEVVTMEEGFIGVVPPFHVKQEEEEAVDVVVDGAGANGSSSASSIDLPKPMEGLHDMGPPPFLRKTFEMVEDPETDPIVSWSEARDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLQQGAFSSMKPDLEAEVDKLKKDQNILKVEILRLRQQQENSQVQLINVQERVRSAELKQYQMLFFLSKMARKPTCIQQLIQKLKRKRELDGGEIGKRPRLLGTQCPVSFPKAMDTIPDVDYRHQSELPGFLSETVITSRTETPEPSPLEDELCSPIQGLRANASRASAHDVSSACCIMSEKLMEENSAVDEELDLIWLDLQVDWWGKLVVSDQSIPREDCKSELMQKPQQQQRRENYFWALSKLPT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0544 492 MobiDBLite consensus disorder prediction 60 89 - -
Glsi13g0544 492 FunFam Heat shock transcription factor 1 145 242 - -
Glsi13g0544 492 SUPERFAMILY "Winged helix" DNA-binding domain 148 241 IPR036390 -
Glsi13g0544 492 SMART hsfneu3 148 241 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 Pfam HSF-type DNA-binding 152 241 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 PRINTS Heat shock factor (HSF) domain signature 152 175 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 PRINTS Heat shock factor (HSF) domain signature 203 215 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 PRINTS Heat shock factor (HSF) domain signature 190 202 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 ProSitePatterns HSF-type DNA-binding domain signature. 191 215 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0544 492 Gene3D - 145 242 IPR036388 -
Glsi13g0544 492 Coils Coil 256 283 - -
Glsi13g0544 492 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 138 368 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0544 Glsi-ChrGlsi13 24042155 24044699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0544 138 349 HSF AT2G26150 55.251 2.10e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi13g0544 HSF_DNA-bind 2.6e-32 CL0123