Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0542 ATGGACAATATAGTTGGGTTATCGGATTCCAACGAGATCAGCAATAGCAGCGGCATATGCTTCTTAGCTAACAACGGCGAAACCCATTCAACTTCAGAGATTCCACCTCCTGATATTGCATCCCTAAGGCGCCTCTCTGAGAACCTCGAATCAATCTTCGAAACCCCAGACTTCGATTTCTTCACCGACGCCAAAATCGTTATCGGTGACGGTCGAGAAGTTCCCGTCCATCGCTGCATTCTATCGGCGAGGAGTGCTTTCTTCAAGAATGTGTTTTCCGGTTCGTCTGCGAACGAGAGAGGCGCCAAGTTGGAACTGAAGGAATTGGCTAAGGATTACGATGTTGGGTTCGATGCGCTTATGTGTGTTCTGGGTTATTTGTATAGTAGCAGAGTGAGGTCGTTGCCGGAAGGTGTTTGTGTTTGTGTGGACGATAATTGCTCCCATTTTGGGTGTAGACCAGCTCTGGATTTCATGGTGGAGGTGCTTTATGCTTCCTCTACGTTTGAAATATCTGAGTTGGTTTCTCTTTATCAGAGGCATCTATTACACATTCTTGACAAAGTTGCAACAGATGACATTTTGGTGGTTCTTTCTGTTGCAAATATATGTGGTAAATCGTGTGAAGAACTGCTGGCAAGGTGTACCGAGATGATAGTGAAATCTGATGTTGATGTTGTCACTCTTGAAAAAGTGCTGCCACAACATATTGTAAAACAAATCATGGATGAACGTACAAAACATGGCTTGTACAGACCCAACAACATCGGTTTTCCAGATAAACATGTAAAAAGAATACACAGGGCTCTTGATTCAGATGATGTTGAATTGGTCCAACTGCTTTTGAGAGAGGGACATACTAATCTAGACGAGGCTTGTGCCCTTCACTATGCTGTTGCATACTGTGATGCAAAGACCACAACCGAACTTCTTGATCTTGGACTCGCTGGTGTAAATTATAAAAATCCTAGAGGCTATAGTGTGCTGCATGTTGCTGCAATGAGGAAAGAGCCCAAGATTATAGTTTCTCTCTTGACAAAGGGAGCACAGCCTTCTGATCTTACTTTGGATGGGAGGAATGCCCTTCAGATTTCGAAGCGCCTTACCAGGGCTGTGGATTATAATAAATCTGCAGAGGAAGGAAAGGCATCTTCCAGGGATCGATTGTGCATTGAGATATTGGAGCAAGCTGAGAGAAGAGAGCCTTTACTTGGGGAGGCTTCTCTTTCTCTTGCTATGGCAGGGGATGATCTGCGTATGAAATTGTTATACCTGGAAAATAGAGTTGGATTGGCAAAAGTATTATTCCCCATGGAAGCTAAGGTCGTGATGGATATTGCTCAAGTTGATGGAACTTGTGAATTTCCATTATCAGACATTTTTCCAAATGTGGGTAGTACTCAGAAGACAACTGTGGATTTAAATGAGGCTCCTTTCAGAATTAAGGAGGAGCATCTGAGCAGGATGAGAGCACTTTCTAGAACTGTGGAATTAGGGAAACGCTTCTTCCCCCGTTGCTCAGAAGTACTGAACAAGATCATGGATGCTGATGATCTATCTCAGCTTGCATGCATGGGCAATGACACTCCTGAAGAACGGCTCGCGAAGCGAAGAAGGTACAAGGAGCTCCAAGAGATTCTGGGTAAGGCCTTCAATGAGGACAAGGAGGAGTTTGATAAGTCTGCTGTGTCGTCGTCATCTTCTTCGACATCAATAGGAGTGGTGAGGAGGCGGCCTAATGGTAAGCTTGCCGGCCATCCCACGAAGAACTAG 1773 0.4467 MDNIVGLSDSNEISNSSGICFLANNGETHSTSEIPPPDIASLRRLSENLESIFETPDFDFFTDAKIVIGDGREVPVHRCILSARSAFFKNVFSGSSANERGAKLELKELAKDYDVGFDALMCVLGYLYSSRVRSLPEGVCVCVDDNCSHFGCRPALDFMVEVLYASSTFEISELVSLYQRHLLHILDKVATDDILVVLSVANICGKSCEELLARCTEMIVKSDVDVVTLEKVLPQHIVKQIMDERTKHGLYRPNNIGFPDKHVKRIHRALDSDDVELVQLLLREGHTNLDEACALHYAVAYCDAKTTTELLDLGLAGVNYKNPRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRNALQISKRLTRAVDYNKSAEEGKASSRDRLCIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVVMDIAQVDGTCEFPLSDIFPNVGSTQKTTVDLNEAPFRIKEEHLSRMRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLACMGNDTPEERLAKRRRYKELQEILGKAFNEDKEEFDKSAVSSSSSSTSIGVVRRRPNGKLAGHPTKN 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0542 590 SMART ANK_2a 261 291 IPR002110 GO:0005515
Glsi13g0542 590 SMART ANK_2a 324 353 IPR002110 GO:0005515
Glsi13g0542 590 Gene3D Potassium Channel Kv1.1; Chain A 33 221 IPR011333 -
Glsi13g0542 590 SUPERFAMILY Ankyrin repeat 264 366 IPR036770 -
Glsi13g0542 590 Pfam NPR1/NIM1 like defence protein C terminal 366 570 IPR021094 -
Glsi13g0542 590 SUPERFAMILY POZ domain 52 184 IPR011333 -
Glsi13g0542 590 Pfam BTB/POZ domain 59 183 IPR000210 GO:0005515
Glsi13g0542 590 PANTHER REGULATORY PROTEIN NPR3 7 574 IPR044292 GO:0009862|GO:2000022|GO:2000031
Glsi13g0542 590 Gene3D - 246 451 IPR036770 -
Glsi13g0542 590 Pfam Domain of unknown function (DUF3420) 223 267 IPR024228 -
Glsi13g0542 590 ProSiteProfiles BTB domain profile. 62 136 IPR000210 GO:0005515
Glsi13g0542 590 CDD BTB_POZ_NPR_plant 43 186 - -
Glsi13g0542 590 ProSiteProfiles Ankyrin repeat profile. 324 356 IPR002110 GO:0005515
Glsi13g0542 590 SMART BTB_4 62 186 IPR000210 GO:0005515
Glsi13g0542 590 FunFam Non-expressor of PR1 36 221 - -
Glsi13g0542 590 MobiDBLite consensus disorder prediction 555 590 - -
Glsi13g0542 590 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 235 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0542 Glsi-ChrGlsi13 24032741 24037054 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi13g0542 NPR1_like_C 9.4e-93 No_clan