Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0536 ATGGAATCTCGTATTGGTAATAAGTTTCGGCTCGGACGGAAGATCGGTAGCGGCTCGTTTGGGGAGATCTATTTAGGTACTAATATTCAAACCAACGAAGAGCTGGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGCTGCTGTATGAGTCCAAGTTATACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAAATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTGATGGATTTGCTTGGACCCAGTCTTGAGGATCTATTTAACTTCTGCAATAGGAAGCTCTCGTTGAAGGCAGTTCTCATGCTTGCAGATCAAATGATCAACCGTGTTGAGTTTGTTCATTCTAAATCATTTCTACATCGGGATATTAAGCCAGATAATTTTCTCATGGGCTTAGGAAGGCGTGCAAACCAGGTTTATATGATTGATTTTGGTTTGGCTAAGAAATATAGAGATAGCTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACAGGAACTGCAAGATATGCAAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAGTCCCTTGGTTATGTCCTGATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTCAAAGCAGGAACAAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCAATTGAGTCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGTTCATTAAGATTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGCGACCTCTTTATTCGTGAAGGCTTTCAGTTTGATTATGTGTTTGACTGGACCATTTTAAAGTATCAGCAATCTCAGCTGACCACTCCTCCAGCACGTGCCCTTGGTCCTAGTGCTGGAACTAATTCTGGAATGCCTCCAGAAGTGACTAATGCTGATGTACAGACAGGAAGGGTAGAAGGTCGACCTCCTGGTATGGTTTCAGGGGACTCCTCAAGGCGAAGAATGTCCGGGCCCATTTTAAATACTTTATCGAGGAATAATATCATGGGTCAGTCAAGTGGGTCATCAAGACAAGTTGCTGTTTCAGGTAGCCGTGATGCATTTATCGTTGGTGAGTCAGATATTCGTACCCGTACTACTGAGGCTAGCCCTGGAGCAGCACATAGAATTTCAAGTGGGCAAAGAAATTTGCCAATTGGATCTTCAGATCCCAAGAGAGTGTCATCTGCAAGAAATGCTTCTCATGTCAAGAATTATGAGACTGCAGTCAAGGGCATTGAAAGTTTGCAGTTAGAAAATGACGAGAAGATCCGTTAG 1359 0.4202 MESRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEELAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCNRKLSLKAVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYMIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLTTPPARALGPSAGTNSGMPPEVTNADVQTGRVEGRPPGMVSGDSSRRRMSGPILNTLSRNNIMGQSSGSSRQVAVSGSRDAFIVGESDIRTRTTEASPGAAHRISSGQRNLPIGSSDPKRVSSARNASHVKNYETAVKGIESLQLENDEKIR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0536 452 FunFam Putative Casein kinase I 1 85 - -
Glsi13g0536 452 CDD STKc_CK1_delta_epsilon 8 282 - -
Glsi13g0536 452 MobiDBLite consensus disorder prediction 391 428 - -
Glsi13g0536 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Glsi13g0536 452 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Glsi13g0536 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0536 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0536 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Glsi13g0536 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0536 452 FunFam Casein kinase I isoform delta-like 1 308 - -
Glsi13g0536 452 MobiDBLite consensus disorder prediction 328 349 - -
Glsi13g0536 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Glsi13g0536 452 PANTHER CASEIN KINASE-RELATED 13 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0536 Glsi-ChrGlsi13 23975531 23984275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0536 7 223 EF-hand Containing Proteins AT2G17890 25.333 1.61e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi13g0536 Pkinase 2.4e-26 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0536 13 23975531 23984275 Glsi13g0536 13 23975531 23984275 ECH