Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0522 ATGGCTGAAATCTTTATTGGTAACCCTAATTGTCCTCTTCAGTGCTTGTCAAGTTCAAAGATGTCCGTCTGCCATGATGCACTCCAAAAGGCAATACAGTTCGATTCTTATCGTGTCCTCTGGACTTTAACGGAAAAGTGTAAAGTTCGATTCGACGGGCAGGCGAAGGGCCAATTAAAGGACCACGTTTCCGACGACTTTGCGTTATCCGCTTCTGGGTCTTTGCTTTCAACTAACGGCGGCGGTGGGATGAGATCAATTGCTGTTGCCGTCAGTGGTGGTTCCGGCGCCAGCAAGGGTAGCCGACGCGCCGTTCAGTGGGCGGTGGAGAAGCTTATGCCTCAAGCCGATAAGTTCATCTTAGTTCACGTGATTCCAAGAATCACGTCGGTTCCAACCCCATCTGGAGAGTCTATTCCCATTATTGATGTAGACGCCAATGTGGCAGCAGCTTATGTGCAGGATGTGAAAGAGAAATTTGAGCAAATCTTTATTCCATTCAAGAAAAAATGCAAAACAAGCACAGCGGAAACTGTGTTACTAGAGGATGACAATCCTGCAACTGGACTTCTTAGATATATAGAAGAGTCAGATATACATGTACTAGTGATGGGAACTTGCTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCAGGGATACCAACAACTGTTCTGAGATGTGCTCCTGACTGTTGTGATGTATATATTGTAGATAGAGATAGAATTATATCAAAATTAGCTGATTCTTCATCGTCACCCTCTTGTGGGAGGAGCTCTAGGTCTTCCATGTCTACCCAAGGAAATAAAAGAGATAGTGATGCTGGCATTGACAGAGAAATGTCTGGACTTAATTTTTCCTCAACAGAATCTAAAATTCTAAAAAATTTCAGGTTTTCATCGACCTCAGATTGTAGTTACGAAGGTTTTCAAACATCTATGAATTCTTCTAAAAAATCCACCATAAATCAAGAAGGAAATCCAGAAAACTCTAGAGATGATGTTGAAACTGTTAGCATCCACTCATTTGATTCAATGGCTTCTACGCAATGTGAACAGTCAGTCATGCAAGAAGTGGAGCAGCTGAAGCTGGAGTTGCAGCATACTATTGCCATGTACAAACAAGTTTGTGAAGAGTTGGTTCATGCTCAAAGCAAGGCCCATTTACTTTCTTCTGAATATCTTGAAGAAACAAGAAGAGTAAATGCTTCCCTGAAAAGGGAGGAGACTTTGAGAAAGATTGCTGCTGAAGAAAAAGAAAAGCATTTAAAAGTCATGAAGGAACTTGAGGAGGCAAAAAATATACTTGCGAAAGAATCTTATGAAAGGCAGATGGCTGAACTGAATGGCCTTAAAGAATCCATAGAAAAACGGAGAATACTTGATACATTGCTCTCAAGTGACAAGAGATACCGGAAGTACACTATGGATGAAATTAAGGAAGCAACAAACTTCTTATCTGAAGATTTTATAATAGGTGAAGGAGGGTATGGAAAAGTTTATAAGTGCAGTCTTGATCACACTCCAGTAGCTGTAAAGGTTCTACACCAGGATGCACTTAACCAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTCAGTCAGCTACACCATCCACACATGGTTTTGCTGGTAGGAGCCTGTCCTGAAAATGGCTGCCTTGTTTATGAATACCTAGAAAATGGAAGTCTAGAGGACTATCTTTTCAGTGAAAATGGGAATCCACCACTGCCTTGGTTTATCCGATTCCGTATAGTTTTTGAAGTGGCGTGTGGGCTATCATACTTGCATAATGCGAAGCCAGAGGCGATTGTTCATCGAGATATGAAACCTGGCAATATCTTGTTAGACAGGAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCCAAACTCCTTTCAGACATTGTGCCTGACAATGTCACAGAATACAGAGAATCAGTTCTTGCTGGTACTATTCACTACATGGATCCAGAGTATAAGAGAACCGGCACTGTCAGACCAAAATCAGATGTATATGCTTTGGGAGTTATAATGCTTCAACTGATAACTGCACGGCATGCACGTGGACTCATCTTGACTGTTGAAAATGCAGTTACAAATGGCTGCTTCCCTGATGTTTTAGATAAATCAGCTGGAGATTGGCCACTGGCTGAGACGGCAGAATTGGCTCAAATTGCCCTGAAATGCACAGCGCTTAGATGCAGAGATAGACCTGATCTTGATACTGAAGTTCTTCCACTCCTGAAAAGATTTTGTGATGTTGCAAATGCTGCTGCAAAGATAGGAAGAAGTGGCATATGCAAGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATAATGGATGATCCACATATTGCTGCGGATGGTTTTACTTATGAGTACAGAGCAATCAAAGCATGGCTCAGCAAACACAATGTGTCACCTGTGACAAGGCACAGATTCCAGCATTCTGCATTGACTCCAAACAATACCTTACGTTCTGCCATTCAGGAGTGGAGGTCAGGAGCGACCTTGTGA 2523 0.4205 MAEIFIGNPNCPLQCLSSSKMSVCHDALQKAIQFDSYRVLWTLTEKCKVRFDGQAKGQLKDHVSDDFALSASGSLLSTNGGGGMRSIAVAVSGGSGASKGSRRAVQWAVEKLMPQADKFILVHVIPRITSVPTPSGESIPIIDVDANVAAAYVQDVKEKFEQIFIPFKKKCKTSTAETVLLEDDNPATGLLRYIEESDIHVLVMGTCSSNFITRKLKGPGIPTTVLRCAPDCCDVYIVDRDRIISKLADSSSSPSCGRSSRSSMSTQGNKRDSDAGIDREMSGLNFSSTESKILKNFRFSSTSDCSYEGFQTSMNSSKKSTINQEGNPENSRDDVETVSIHSFDSMASTQCEQSVMQEVEQLKLELQHTIAMYKQVCEELVHAQSKAHLLSSEYLEETRRVNASLKREETLRKIAAEEKEKHLKVMKELEEAKNILAKESYERQMAELNGLKESIEKRRILDTLLSSDKRYRKYTMDEIKEATNFLSEDFIIGEGGYGKVYKCSLDHTPVAVKVLHQDALNQKEEFLKEVEILSQLHHPHMVLLVGACPENGCLVYEYLENGSLEDYLFSENGNPPLPWFIRFRIVFEVACGLSYLHNAKPEAIVHRDMKPGNILLDRNYVSKIADVGLAKLLSDIVPDNVTEYRESVLAGTIHYMDPEYKRTGTVRPKSDVYALGVIMLQLITARHARGLILTVENAVTNGCFPDVLDKSAGDWPLAETAELAQIALKCTALRCRDRPDLDTEVLPLLKRFCDVANAAAKIGRSGICKPSQYYCPILQEIMDDPHIAADGFTYEYRAIKAWLSKHNVSPVTRHRFQHSALTPNNTLRSAIQEWRSGATL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0522 840 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 459 558 - -
Glsi13g0522 840 SUPERFAMILY RING/U-box 770 835 - -
Glsi13g0522 840 Gene3D HUPs 83 243 IPR014729 -
Glsi13g0522 840 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 84 240 - -
Glsi13g0522 840 Coils Coil 412 458 - -
Glsi13g0522 840 Gene3D Phosphorylase Kinase; domain 1 465 558 - -
Glsi13g0522 840 FunFam Os07g0541700 protein 559 648 - -
Glsi13g0522 840 SMART serkin_6 486 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0522 840 CDD STK_N 86 238 - -
Glsi13g0522 840 Gene3D Transferase(Phosphotransferase) domain 1 559 762 - -
Glsi13g0522 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Glsi13g0522 840 CDD RING-Ubox_WDSUB1-like 770 824 - -
Glsi13g0522 840 SUPERFAMILY Protein kinase-like (PK-like) 469 742 IPR011009 -
Glsi13g0522 840 ProSitePatterns Protein kinases ATP-binding region signature. 492 513 IPR017441 GO:0005524
Glsi13g0522 840 SMART Ubox_2 772 834 IPR003613 GO:0004842|GO:0016567
Glsi13g0522 840 Pfam U-box domain 770 835 IPR003613 GO:0004842|GO:0016567
Glsi13g0522 840 PANTHER OS02G0152300 PROTEIN 87 833 - -
Glsi13g0522 840 ProSiteProfiles U-box domain profile. 768 840 IPR003613 GO:0004842|GO:0016567
Glsi13g0522 840 MobiDBLite consensus disorder prediction 248 271 - -
Glsi13g0522 840 ProSiteProfiles Protein kinase domain profile. 486 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0522 840 MobiDBLite consensus disorder prediction 248 281 - -
Glsi13g0522 840 Pfam Universal stress protein family 85 216 IPR006016 -
Glsi13g0522 840 Pfam Protein tyrosine and serine/threonine kinase 491 742 IPR001245 GO:0004672|GO:0006468
Glsi13g0522 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 839 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0522 Glsi-ChrGlsi13 23900784 23910808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0522 79 840 Plant U-box Gene Family AT5G57035 53.571 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi13g0522 PK_Tyr_Ser-Thr 3.3e-40 CL0016