Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0519 ATGGAGAATCACAAAGTGGAGAAGGAGGAGAAGGAAGAGGTAAAAGAGGGGGAGGAGGACGACGAGGTAGGAGCCCTGGTTGGGGAGGAGGAGGACGATGGAGAGGTGGGTTCGAGCTTGACCATGGAGAGGGTGGCTGCAGCCAAGAAATTCATCGAGAATCATTACAGGGCTCAGATGAAGCACATCCAAGAACGCAAGGAGAGGCGTTCAGTGCTGGAAAAGAAGTTAGCATCTTCTCATGTAACAGAAGAGGAACAGATCAATCAACTGAAGGATTTAGAGCGCAAGGAGACTGAGTATATACGGTTAAAAAGACACAAAATATGTGTTGATGATTTTGATCTTCTAGTTATTATCGGGAGGGGAGCCTTTGGAGAGGTAAGACTTTGTCGTGAGAAGAAATCAGGCAATATTTATGCCATGAAAAAGCTGAAAAAGTCTGAAATGCTCAGCAGGGGGCAGGTTGAACATGTTAGAGCTGAACGGAACTTACTAGCAGAAGTTGCCAGTCACTGCATTGTGAAACTCTATTACTCCTTTCAGGATGCTGAATACTTATATTTGATAATGGAATATTTACCTGGGGGTGATATAATGACTTTGCTGATGAGAGAAGAAACTTTAACTGAAACTGTGGCTAGATTTTACATCGCCCAAAGTGTTTTGGCCATAGAGTCTATTCATAAACATAATTACATTCATCGAGATATAAAACCTGACAACCTTTTATTGGACAAAAATGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCACTTGATTGCTCAAATTTATCATCTATAAATGAGAATGAAGTCCTAGATGATGATAACTTGAATGATACTATGGACATTGATAACTCCTTCCCAAATAGCAGAAGTGGAAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAGCATTGGCAAATAAACAGAAGGAAGTTGGCATTTTCCACAGTTGGAACTCCAGACTATATTGCTCCTGAAGTGTTGCTGAAAAAGGGATATGGTGTGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTACGAGATGCTTGTTGGTTATCCCCCGTTCTATTCCGATGACCCAGTAACAACATGCAGAAAGATTGTACATTGGAAAAATCACTTAAAATTTCCAGACGAGGCAAGGTTGACGCCTGAGGCAAAGAATCTAATTTGTAGGTTGCTTTGTGATGTTGACCATAGGCTTGGTACCAGAGGGGCAGATGAAATTAAAGTTCATCCTTGGTTCAAAGATGTTGTATGGGACAAGCTCTATGAAATGGAGGCAGCATTCAAACCACAAGTCAATGGGGAGCTTGACACTCAAAATTTTATGAAATTTGATGAGGTTGAACAGCCAAAACCAGCTAGAGCCGGATCCGGACCCATGAGGAAGATGCTTTTGACTCCTCAAGATCTTAGTTTTGTTGGTTATACATATAAGAATTTTGATGCTGTCAAGGGAATACGTCGATCTATAGATCTGGGAAACATTTCATTGCCGCCATCAGTTGACTCTCCACAGAGTGATTCTGGAATAGAGTATTCTAGATACTCAATGGACAGCCCATCTTAG 1590 0.4182 MENHKVEKEEKEEVKEGEEDDEVGALVGEEEDDGEVGSSLTMERVAAAKKFIENHYRAQMKHIQERKERRSVLEKKLASSHVTEEEQINQLKDLERKETEYIRLKRHKICVDDFDLLVIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSNLSSINENEVLDDDNLNDTMDIDNSFPNSRSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARLTPEAKNLICRLLCDVDHRLGTRGADEIKVHPWFKDVVWDKLYEMEAAFKPQVNGELDTQNFMKFDEVEQPKPARAGSGPMRKMLLTPQDLSFVGYTYKNFDAVKGIRRSIDLGNISLPPSVDSPQSDSGIEYSRYSMDSPS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0519 529 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 456 - -
Glsi13g0519 529 CDD MobB_NDR_LATS-like 48 109 - -
Glsi13g0519 529 SUPERFAMILY Protein kinase-like (PK-like) 97 468 IPR011009 -
Glsi13g0519 529 SMART serkin_6 114 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0519 529 FunFam Non-specific serine/threonine protein kinase 198 265 - -
Glsi13g0519 529 Pfam Protein kinase domain 314 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0519 529 Pfam Protein kinase domain 117 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0519 529 ProSiteProfiles Protein kinase domain profile. 114 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0519 529 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Glsi13g0519 529 FunFam Non-specific serine/threonine protein kinase 75 197 - -
Glsi13g0519 529 Gene3D Transferase(Phosphotransferase) domain 1 200 438 - -
Glsi13g0519 529 FunFam Non-specific serine/threonine protein kinase 440 450 - -
Glsi13g0519 529 MobiDBLite consensus disorder prediction 13 36 - -
Glsi13g0519 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Glsi13g0519 529 SMART pkinase_C_6 422 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi13g0519 529 MobiDBLite consensus disorder prediction 1 39 - -
Glsi13g0519 529 FunFam Non-specific serine/threonine protein kinase 320 439 - -
Glsi13g0519 529 MobiDBLite consensus disorder prediction 504 529 - -
Glsi13g0519 529 CDD STKc_NDR_like 112 486 - -
Glsi13g0519 529 Coils Coil 1 21 - -
Glsi13g0519 529 ProSiteProfiles AGC-kinase C-terminal domain profile. 422 495 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi13g0519 529 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Glsi13g0519 529 MobiDBLite consensus disorder prediction 502 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0519 Glsi-ChrGlsi13 23875626 23887609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0519 18 507 AGC Kinase Gene Family AT2G19400 77.264 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Glsi13g0519 Pkinase 7e-43 CL0016