Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0516 ATGGAGGAAATATCTTCGACGGTTGCAGTGCCATTTACTCTTGGAAAGTTTATGCAAAAGGAGGCAGCAGTGACAACCCAGATAGCTGATTGGGCCTGGACTCAAACCCCTAATCAGGCTAGCAAGGAAGATGATTTCATGCTAGCAGTTGCTTTTCAGTGTCTGCATAATTCAAGCTCTCAATCTTTGGCTAGTGACCATAGTAATTTCTGTGGGGATCAATCTTCAACTTTAAGGACTACTTGTTCTGAGATCGATTTACCAATTACTGTCAAGGTTGATGATAATATCCATGGTAAGTCAAGTTTGAACAAGCCACATACAGCACTAGAGCCAGTGCAGAAACTGGTCTCTGTTAAAATGGATCTAGAGAATGAGGATGGCAGTGGATCAGATGGGTGTGATCCTAAACCATCAGATTTGCTTGTGATTTCAGAGGAGAAAATTTGCAGAACGAACTGCCAGAACGTTTTGGAATTGAGTAGTGGACCCCTTTGGGGTTTTTCATCAATATGTGGAAGGAGACCGGAGATGGAAGATGCTATTGCTGTTGAGCCTCAGCTCTTGCAAGTCCCTTCACATATGCTTACGGATGGCCATCTGAATGAAAACACAAAATCCTCAGTAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGCTGTCAGGTTGCTAATTACTGCCGAAAGCGTCTTCATTCAGTATTGGTTGAGGAGATAGAGGCTGCAGAATTAAGTTTTGGCAAAAAGAATCGAGGAGACAGTTGGCGGGACCATTGGAAGAAAGCATTCTCCAAGTGTTTTCAGAAAGTTGATGATGAGGTTGAAGGAACTCATGCAACTAATAACGAAAACAATAGTGATGGATCTGAGTCTAGTATTGAACCTCTTGCCCCTGAAACGGTTGGTTCTACTGCGGTGGTTGCCATTCTAAGTGAAACCCACATAATAGTTGCAAATTGTGGGGATTCAAGAGCAGTCCTGTGTCGTGGAAAAGAAGCCCTTCCGTTGTCTTCTGACCACAAACCAAATAGGGAAGATGAGTGGGCAAGGATAGAAGCTGCCGGAGGAAGGGTCATACAGTGGAATGGGTACCGAGTTCTTGGAGTTTTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCTGAACCAGAAGTGAAATTTGTCCTTAGAGAGAAAAACGATGAGTGCCTTATTCTAGCCAGCGATGGTTTATGGGATGTCATGACAAATGAAGAAGCCTGCCAAGCTGCCAGAAACCGAATCCTTCTTTGGCACAAGAAGTACGGCGACAATGGATCGCTACAAGGTGAGGAGGGAGTTGATCCTGCAGCTCAATCTGCTGCAGAGTATCTCTCTAGACTGGCCCTCCAGAGGGGAAGCAAAGATAACATCTCTGTTATTGTGATAGACTTGAAGGCTCAAAGAAAGTTTAAGAGAAAGACATAA 1467 0.441 MEEISSTVAVPFTLGKFMQKEAAVTTQIADWAWTQTPNQASKEDDFMLAVAFQCLHNSSSQSLASDHSNFCGDQSSTLRTTCSEIDLPITVKVDDNIHGKSSLNKPHTALEPVQKLVSVKMDLENEDGSGSDGCDPKPSDLLVISEEKICRTNCQNVLELSSGPLWGFSSICGRRPEMEDAIAVEPQLLQVPSHMLTDGHLNENTKSSVAHFFGVYDGHGGCQVANYCRKRLHSVLVEEIEAAELSFGKKNRGDSWRDHWKKAFSKCFQKVDDEVEGTHATNNENNSDGSESSIEPLAPETVGSTAVVAILSETHIIVANCGDSRAVLCRGKEALPLSSDHKPNREDEWARIEAAGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWIIPEPEVKFVLREKNDECLILASDGLWDVMTNEEACQAARNRILLWHKKYGDNGSLQGEEGVDPAAQSAAEYLSRLALQRGSKDNISVIVIDLKAQRKFKRKT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0516 488 SUPERFAMILY PP2C-like 162 479 IPR036457 -
Glsi13g0516 488 Gene3D - 152 488 IPR036457 -
Glsi13g0516 488 CDD PP2Cc 167 478 IPR001932 -
Glsi13g0516 488 MobiDBLite consensus disorder prediction 278 297 - -
Glsi13g0516 488 SMART PP2C_SIG_2 196 478 IPR001932 -
Glsi13g0516 488 ProSiteProfiles PPM-type phosphatase domain profile. 165 478 IPR001932 -
Glsi13g0516 488 ProSitePatterns PPM-type phosphatase domain signature. 212 220 IPR000222 GO:0043169
Glsi13g0516 488 SMART PP2C_4 155 476 IPR001932 -
Glsi13g0516 488 FunFam Protein phosphatase 2C 16 153 488 - -
Glsi13g0516 488 Pfam Protein phosphatase 2C 168 471 IPR001932 -
Glsi13g0516 488 MobiDBLite consensus disorder prediction 280 297 - -
Glsi13g0516 488 PANTHER PROTEIN PHOSPHATASE 121 478 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0516 Glsi-ChrGlsi13 23847079 23850126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0516 1 487 PP2C-type Phosphatase Gene Family AT4G26080 49.899 2.55e-145 421