Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g0509 | ATGGACCATTCATTGTGTTTATCTTTGCAGTCTGCACCTGTCAACATCATTGTAGGTTCTCATGTCTGGGTTGAAGATCCAGTGGAAGCATGGATCGGTGGAGAAGTTTTTAAAATCAATGGTGAAGAAGTCCGTGTTCGCACTGCAGCTGGGAAAACAGTTGTGAGTAATATCTCGAAGGTTTTTCCCAAGGATAATGAAGGTCCTCCTGGGGGTGTAGATGACATGACAAAACTGTCATATTTGCATGAACCGGGAGTCCTGCACAACTTGGCAACTAGATACGAACTCAATGAAATCTATACCTATACTGGAAATATCCTGATTGCCATAAACCCATTTCAAAGATTACCGCATCTATATGATACTCACATGATGGAACAGTACAAAGGAGCTGCATTTGGAGAGTTAAGTCCCCATGTTTTTGCAGTTGCAGATGTAGCATACAGAGCAATGATCAATGAGGGAAAAAGCAACTCAATCCTGGTTAGTGGTGAAAGTGGTGCTGGTAAGACGGAGACAACAAAGATGCTCATGCGATATCTTGCATACCTAGGGGGCCGATCTGGAGTAGAAGGGCGGACAGTAGAACAACAAGTTCTAGAATCTAATCCAGTTCTTGAAGCATTCGGCAATGCAAAAACAGTTAGAAATAATAACTCAAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAACAAGGGAAGGATCTCAGGGGCAGCCATACGCACTTACTTGCTTGAGAGGTCTCGTGTTTGCCAAATTTCAGATCCTGAAAGAAATTACCATTGCTTTTACCTTCTTTGTGCAGCACCAGCTGAGGAAAAAGAGAAGTATAAGCTGGGAAGTCCTAGCTCCTTCCATTACTTAAATCAATCCAACAGCTATGAACTCGATGGAGTGGATGATGCACATGAATATCTTGCGACTAGAAGGGCAATGGATATTGTTGGAATCAGTGAGGAAGAGCAGGAAGCAATTTTTAGGGTTGTTGCAGCAATTCTGCATCTTGGAAATATTGAATTTGCAAAAGGAGAGGAGATTGACTCTTCTGTCATCAAGGATGAGAAGTCTAGATTCCATCTTGATACCACTGCTGAACTTCTTAAGTGTGATGCTAAGAGCTTGGAAGATGCTCTAATCAAACGTGTGATGGTAACACCTGAGGAGGTTATTACAAGAACCCTAGATCCTGTTGCAGCTCTTGGTAGCAGAGATGCATTAGCTAAAACCATTTATTCACGCTTATTTGATTGGCTTGTGGAGAAGATTAACATTTCAATTGGGCAAGATCCAAATTCAAAATCCATTATTGGAGTTCTTGATATCTATGGATTTGAAAGTTTTAAGTTCAATAGTTTTGAGCAGTTCTGTATTAATTTTACAAATGAAAAGCTGCAACAACATTTTAACCAGCATGTTTTTAAAATGGAACAAGAAGAATACACCAAGGAAGAGATCGATTGGAGTTACATAGAGTTTGTTGATAACCAAGATGTTTTGGATCTGATTGAAAAGAAACCTGGAGGAATAATTGCTCTTCTCGATGAAGCCTGTATGTTCCCTAAGTCTACACATGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAACAACAAGCGCTTTATCAAACCTAAACTTTCTCGGACTAGTTTTACCATATCTCATTATGCAGGGGAGGTGATGTACCAGGCTGATATGTTTCTTGACAAAAACAAGGATTATGTGGTTGCAGAACATCAGGATCTACTGACAGCCTCGAAGTGCTTGTTTGTGGCTGGTCTATTCCCTCGTTCTCCGGAAGAGTCATCAAAAGCAACCAAGTTCTCTTCAATTGGATCACGCTTTAAGTTACAACTTCAATCTTTGATGGAGACCCTAAGTTCAACGGAACCTCACTATATCAGATGTGTGAAGCCAAACAATGTCCTCAAGCCTGCTATTTTTGAAAATCTCAATATTATCCAACAATTACGCTGTGGTGGTGTTCTTGAGGCAATTAGAATCAGTTGTGCTGGATATCCTACTAGACGGACCTTTTATGAGTTTCTTAATCGATTTGGTGTTCTTGCTCCTGAAGTTTTGGAAGGAAACTACGATGACAAAGTTGCGTGCCAAATGATCCTAGATAAAATGGGTTTGAAAGGCTACCAGATAGGCAAGGCAAAGGTTTTCCTACGAGCTGGTCAGATGGCTGAGTTGGATGCAAGAAGAGCAGAGGTTCTTGGAAATGCAGCCAGAATCATCCAGAGGCAAATACGTACCCATATTGCACGCAAGGAATTCATTGAATTGCGTCGAGCTGCAATTCATTTGCAATCTCATTTGCGAGGCATACTGGCTCGGAAGCTCTATGAGCAGTTGCGCCGTGAAGCAGCAGCTGTGAAAATAGAGAAGAGCTTCAGAGGGTACATAGCCAGGAAATCTTACTTAACAGCACGATCATCTGCAATCACATTACAGACAGGTTTAAGGGCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAAGCTGCAATTCTTATACAGGCTCATGCACGTCTGCATATTGCATATTCTTATTATAAAAGACTGCAGAAGGCTGCAATTGTTACTCAGTGTGGTTGGAGGCGAAGGGTTGCTAGGAGGGAACTCAGAATGCTTAAAATGGCTGCAAGAGAAACAGGGGCCCTTAAAGAAGCAAAAGACAAACTAGAAAAACGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTCTGAGAACTGATTTGGAAGAGGAAAAAGCACAAGAAATTGCGAAGTTGCAGGATGCTTTGCATGCAATGCAAATACAAGTAGAAGAAGCAAATGCTAAGGTCATCAAAGAACGCGAGGCAGCTCGGAAAGCAATTGAAGAAGCGCCTCCAGTTATTAAGGAGACTCCTGTTATAATTCAAGATACTGAAAAGATTAATTCCTTAATGGCAGAAGTCAATAGTTTGAAGGAATCACTGCTATTGGAAAGAGAGGCAAAAGAAGAGGCCAGGAAGGCTCATTCAGAGGCCGAGGCTAGAAATGCAGAGCTGTTTAAGAAAGTTGAGGATTCTGATCGCAAAGCTGATCAACTCCAGGAATTGGTTCAGAGATTGGAAGAGAAAATGTCCAATGCAGAGTCAGAAAATCAAGTTCTTCGCCAACAAGCACTGGCTGTATCACCAACTGCAAAATCACTATCTGCGAGACCAAAGTCTGTGATCTTACAGAGGACACCAGAAAATGGGAATGCTCTAAATGGTGAAGCAAAAATTGCATCAGACATGACTCTTGCTGTATCAAATGTACGTGAACCTGAATCTGAGGGAAAACCACAAAAATCTCTCAATGAGAAGCAGCAAGAAAATCAAGACATATTAATCAAGAGCATATCACAAGATTTGGGATTTTCTGGGGGAAAACCTGTTGCTGCATGTATCATTTATAAATGCCTTCTTCACTGGAGGTCATTTGAAGTTGAAAGAACAAGTGTTTTTGACCGTATTATTCAAACAATTGCTTCAGCCGTTGAGGCCCAGGATAATACTGATGTATTAGCCTACTGGTTGTCTAATACATCCACTTTGTTGTTGTTGCTCCAACGCACTCTCAAAGCAACTGGAGCAGCTAGCTTAACACCACAACGACGGAGAACAGCATCAGCTTCCTTGTTTGGAAGAATGTCTCAAGGGCTAAGGGCATCTCCTCAAGGTGCTGGGCTGTCATTTCTAAATGGTCGAGGGCTTGGTAGTAGACTGGATGATTTGCGGCAAGTGGAGGCAAAATATCCAGCACTGCTGTTTAAGCAGCAGCTTACTGCCTTCCTTGAAAAAATATATGGAATGATAAGAGACAACCTTAAGAAGGAGATATCTCCGTTACTTGGATTGTGTATCCAGGCTCCAAGGACTTCACGTCAAAGTTTAGTAAAAGGACGCTCACATGCTAATGCAGTTGCACAACAAGCTTTAATTGCTCACTGGCAAAGTATTGTGAACAGCTTAAACAAGTCTCTGAAGATAATGAAAGCAAACTATGTGCCCCCTTTTTTGGTCTGTAAAGTGTTTACTCAAATTTTCTCATTCATTAATGTTCAACTATTCAACAGTCTTCTGTTGCGTCGTGAGTGTTGTTCATTCAGTAATGGGGAGTACGTGAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCAGTGATGCAACAGAGGAGTATGCTGGCTCAGCTTGGGAGGAACTGAGGCATATCAGGCAGGCTGTTGGATTCCTGGTGATACATCAAAAACCCAAAAAAACCTTGAATGAGATAACAAAGGAGCTTTGCCCTGTTCTCAGTATACAACAGTTATACAGGATCAGTACAATGTACTGGGATGATAAATATGGCACACACAGCGTGTCTTCAGATGTTATAGCAAACATGAGAGTTATGATGTCTGAGGACTCCAACAATGCTGTCAGCAGTTCTTTCCTACTGGACGATGACTCAAGCATTCCATTTTCGGTGGATGACATTTCCAAATCCATGCAACAAGTAGAGGTAGCGGAAGTGGATCCTCCTCCATTGATACGAGAAAATTCAGGATTTGCATTCTTACAAGCACGCTCGGATTGA | 4623 | 0.4144 | MDHSLCLSLQSAPVNIIVGSHVWVEDPVEAWIGGEVFKINGEEVRVRTAAGKTVVSNISKVFPKDNEGPPGGVDDMTKLSYLHEPGVLHNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDNKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEEKEKYKLGSPSSFHYLNQSNSYELDGVDDAHEYLATRRAMDIVGISEEEQEAIFRVVAAILHLGNIEFAKGEEIDSSVIKDEKSRFHLDTTAELLKCDAKSLEDALIKRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINISIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTSFTISHYAGEVMYQADMFLDKNKDYVVAEHQDLLTASKCLFVAGLFPRSPEESSKATKFSSIGSRFKLQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENLNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLEGNYDDKVACQMILDKMGLKGYQIGKAKVFLRAGQMAELDARRAEVLGNAARIIQRQIRTHIARKEFIELRRAAIHLQSHLRGILARKLYEQLRREAAAVKIEKSFRGYIARKSYLTARSSAITLQTGLRAMKARDEFRFRKQTKAAILIQAHARLHIAYSYYKRLQKAAIVTQCGWRRRVARRELRMLKMAARETGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEIAKLQDALHAMQIQVEEANAKVIKEREAARKAIEEAPPVIKETPVIIQDTEKINSLMAEVNSLKESLLLEREAKEEARKAHSEAEARNAELFKKVEDSDRKADQLQELVQRLEEKMSNAESENQVLRQQALAVSPTAKSLSARPKSVILQRTPENGNALNGEAKIASDMTLAVSNVREPESEGKPQKSLNEKQQENQDILIKSISQDLGFSGGKPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLLLLQRTLKATGAASLTPQRRRTASASLFGRMSQGLRASPQGAGLSFLNGRGLGSRLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRQSLVKGRSHANAVAQQALIAHWQSIVNSLNKSLKIMKANYVPPFLVCKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCSDATEEYAGSAWEELRHIRQAVGFLVIHQKPKKTLNEITKELCPVLSIQQLYRISTMYWDDKYGTHSVSSDVIANMRVMMSEDSNNAVSSSFLLDDDSSIPFSVDDISKSMQQVEVAEVDPPPLIRENSGFAFLQARSD | 1540 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0509 | 1540 | Gene3D | Kinesin motor domain | 74 | 671 | IPR036961 | - | |
| Glsi13g0509 | 1540 | FunFam | unconventional myosin-Va | 795 | 842 | - | - | |
| Glsi13g0509 | 1540 | ProSiteProfiles | Dilute domain profile. | 1171 | 1483 | IPR002710 | - | |
| Glsi13g0509 | 1540 | Coils | Coil | 886 | 966 | - | - | |
| Glsi13g0509 | 1540 | PRINTS | Myosin heavy chain signature | 158 | 183 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | PRINTS | Myosin heavy chain signature | 205 | 232 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | PRINTS | Myosin heavy chain signature | 101 | 120 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | PRINTS | Myosin heavy chain signature | 438 | 466 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | PRINTS | Myosin heavy chain signature | 491 | 519 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 791 | 813 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 743 | 765 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 766 | 788 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 814 | 836 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 862 | 884 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | SMART | iq_5 | 839 | 861 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 767 | 796 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | FunFam | Myosin XI D | 676 | 739 | - | - | |
| Glsi13g0509 | 1540 | Pfam | Myosin N-terminal SH3-like domain | 18 | 55 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | SMART | DIL_2 | 1358 | 1465 | IPR002710 | - | |
| Glsi13g0509 | 1540 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 44 | 794 | IPR027417 | - | |
| Glsi13g0509 | 1540 | Gene3D | - | 448 | 632 | - | - | |
| Glsi13g0509 | 1540 | Pfam | DIL domain | 1359 | 1462 | IPR002710 | - | |
| Glsi13g0509 | 1540 | SMART | MYSc_2a | 65 | 742 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 792 | 821 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 17 | 66 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | CDD | MYSc_Myo11 | 85 | 729 | IPR036018 | - | |
| Glsi13g0509 | 1540 | Gene3D | - | 676 | 739 | - | - | |
| Glsi13g0509 | 1540 | FunFam | unconventional myosin-Va | 746 | 794 | - | - | |
| Glsi13g0509 | 1540 | Gene3D | - | 261 | 319 | - | - | |
| Glsi13g0509 | 1540 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 794 | 892 | IPR027417 | - | |
| Glsi13g0509 | 1540 | FunFam | unconventional myosin-Va | 843 | 890 | - | - | |
| Glsi13g0509 | 1540 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 321 | 610 | - | - | |
| Glsi13g0509 | 1540 | PANTHER | MYOSIN | 66 | 1471 | - | - | |
| Glsi13g0509 | 1540 | FunFam | Class V myosin | 448 | 592 | - | - | |
| Glsi13g0509 | 1540 | ProSiteProfiles | Myosin motor domain profile. | 71 | 741 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 815 | 844 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | Coils | Coil | 1005 | 1060 | - | - | |
| Glsi13g0509 | 1540 | Pfam | IQ calmodulin-binding motif | 768 | 787 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | Pfam | IQ calmodulin-binding motif | 841 | 861 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | Pfam | IQ calmodulin-binding motif | 746 | 764 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | Pfam | IQ calmodulin-binding motif | 865 | 884 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | FunFam | Myosin heavy chain | 261 | 316 | - | - | |
| Glsi13g0509 | 1540 | CDD | MyosinXI_CBD | 1122 | 1506 | IPR037975 | GO:0007015 | |
| Glsi13g0509 | 1540 | Gene3D | - | 744 | 793 | - | - | |
| Glsi13g0509 | 1540 | Gene3D | - | 842 | 891 | - | - | |
| Glsi13g0509 | 1540 | Gene3D | - | 794 | 841 | - | - | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 746 | 770 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | Pfam | Myosin head (motor domain) | 73 | 729 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Glsi13g0509 | 1540 | FunFam | Myosin 2 | 321 | 436 | - | - | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 863 | 892 | IPR000048 | GO:0005515 | |
| Glsi13g0509 | 1540 | ProSiteProfiles | IQ motif profile. | 840 | 866 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g0509 | Glsi-ChrGlsi13 | 23767835 | 23781740 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0509 | 76 | 1540 | Myosins gene family | AT5G20490 | 83.959 | 0.0 | 2536 |