Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0505 ATGGACGGAGGAGGAGCCCAGTACAACCCTCGCACTGTGGAGGAGGTTTTCAGGGACTTCAAGGGTCGTAGGGCTGGCATGATCAAGGCTCTTACTACTGATGTTGAGGAATTCTACCAGCAGTGCGACCCAGAAAAGGAGAATCTTTGCCTGTATGGATCCCCCAATGAACAATGGGAAGTTAACTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCTGAGCCTGCATTGGGGATTAATTTTGCTAGGGATGGAATGCAAGAAAAAGATTGGCTGTCTTTGGTTGCCGTTCACAGTGATGCATGGTTACTTGCAGTGGCTTTCTATTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAGCGCCTGTTTACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAAACAAAGGAAAAGTCGACTGTTTCAAATCACATCGGCAACAAATCAAAGTCTGTCTCAAAAGGGCAAGCATTCGAATCAGCCAAGTATTCAAAGCTTGCTAGGGACGAGGATGAGGTATTGGATGAAGACGACGAAGAAGAGCATGGAGAGACCTTATGTGGTGCTTGCGGGGAGAACTATGCATCTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCCAGGGCTGAGCACATCAAGCAGTACAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA 756 0.463 MDGGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGSPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGTAKKQTKEKSTVSNHIGNKSKSVSKGQAFESAKYSKLARDEDEVLDEDDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0505 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Glsi13g0505 251 SMART PHD_3 197 245 IPR001965 -
Glsi13g0505 251 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Glsi13g0505 251 CDD PHD_AL_plant 197 247 IPR044104 -
Glsi13g0505 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Glsi13g0505 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0006355|GO:0042393
Glsi13g0505 251 FunFam PHD finger alfin-like protein 189 246 - -
Glsi13g0505 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Glsi13g0505 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Glsi13g0505 251 Pfam PHD-finger 198 247 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0505 Glsi-ChrGlsi13 23742155 23745908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0505 1 250 Alfin-like Transcription Factor Family AT3G42790 76.494 1.37e-126 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi13g0505 Alfin 4.2e-70 No_clan