Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0502 ATGGCACGTATTCCTTATCCGTATGCTGATCCTTTTTTCGGTGGTTCATTAGTTGCTTATGGACCACAGGCTATCAGTCAACCCCAAATGTTGCCTCAGATGCTGGGTTTAGCATCTACCAGAGTTGCATTACCGCTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCGAAACAATACCATGGAATTCTGAGAAGGCGACAATCACGAGCAAAGCTCGAGGCTCAAAATAAACTCATCAAGAATCGGAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAAGAGGGTTAGGGGATCTGGGGGACGCTTTCTCAGCACCAAACAACTTCAACAGTCCAATGCAGAACTTGTCACTGGTTCCAATTCTGGCTCAGACTCTGGCAACCTATATCAAAAGAAAGATGCATTAGAGGTGGAGATTCATCCCTCAAGAACTGGTGAAAATGCATCTTCCATCTCCACCTGCTCTGACATGACAAGTGTGTCCAGTAACAATGTCAATTTTAGGCAGCCTGAGCGCAAATTCTTGGGGAACTCTCCAAACTTGGGAAGTGCATCACAATGCAGTGGGGGACTCACCTTCGGTGGTTCCCAGCATCGCGCATCGATTGTCCGGTGA 630 0.473 MARIPYPYADPFFGGSLVAYGPQAISQPQMLPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALKRVRGSGGRFLSTKQLQQSNAELVTGSNSGSDSGNLYQKKDALEVEIHPSRTGENASSISTCSDMTSVSSNNVNFRQPERKFLGNSPNLGSASQCSGGLTFGGSQHRASIVR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0502 209 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Glsi13g0502 209 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Glsi13g0502 209 MobiDBLite consensus disorder prediction 148 168 - -
Glsi13g0502 209 Gene3D - 50 112 - -
Glsi13g0502 209 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Glsi13g0502 209 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Glsi13g0502 209 MobiDBLite consensus disorder prediction 145 168 - -
Glsi13g0502 209 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Glsi13g0502 209 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
Glsi13g0502 209 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 168 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0502 Glsi-ChrGlsi13 23710780 23712002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0502 2 116 CCAAT-HAP2 Transcription Factor Family AT1G17590 65.812 1.15e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi13g0502 CBFB_NFYA 2.6e-27 No_clan