Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0482 ATGGCGATAACAATCTTGGAGCGCGATTCTCCATCGTCCAGCCACCGTATCTTCGTCGTCAATCTCCACGGAACCGATATCACCGTGACGGTCACCGCCGAAGCCTCCGTCGCCCGAAGGTGGATTTATTCCGCCCTCCACATTTACCGGCAGTTCCTGAGCTGCCTCGTCGTCGGTCTCGGAGTTCAGTGGACTCCCGGTGACAGGAACTCTCCGGCAGATACATTGCAACTTTGCATCGGCCGCCGGTGCCTCATTTACCAACTGGCTCAGACCGATTACGTTCCGAATATCCTCCGCCGGTTCCTCATGAACCCTTGTCACACCTTCGTTGGCTTCTGGAACCATTCGGATAGGCGGAAGCTGGAGATTTCGAACCATAAGTTGGAGATGCTTAGGGATCCTCTGGATCTAAGGAAGTACGTGGAAACGGATGACAACGAGAGCCTAACGGGTGCTTCGATGGAGGAGATTGTAGAGGAATGCCTTGGGTTCAGTGGAGTAAGCTTGAGGAGGGAGATCAGTATGAGCGATTGGGATGATGAATATCTCAGCGAGGATCAAGTTCTGCAAGCTTCTCTCGACGCTTACTGTGCGTTCGAGATCGGGAGGAACAATAGGGCTTGGAAATATACAAGGCCTGTAAGTGGATTCATTCTGGAGGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACAACCACGATGCTCACCCCTATCGTCACTCTAGAGCTCCCTCCCGCTTCTCAGACGCTCCCTTCAACCACCAAGGCGGCTTTCGGTCTGGTGGAGGCGCTCATCACCGTCCTTTTGACAGTCCACCGCATCGCTCTCCCGGAAGAGGTGCAGGGTTCCGACCACCGGGTGGCGGTGGCGGTGATGGGTTCAGGCCATTGAGTGGCGAGGGTCCTGGAGGATTTGGGTTTAACAGTCATCAGGTGCCACCACTGACGGGTCAGAAACGAGGGTTTCCCTTCTCTGGACGTGGAGGATCGCCAGATCGTTTTGATGGGGGAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCACGGACAGCAACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGAAATGTAATCGAGGTTGCTCTGATCAAAGATAAAAAGACAGGACAGCAGCAAGGTTGTTGTTTTATAAAGTATGCTTCCCTAGAAGAAGCTGATCGGGCAATTAGAGCATTGCACAATCAACATAATCTTCCTGGAGGTGTAGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGCCTTGGTGCAGTCGAGTACAAATTATTTGTGGGCTCTCTGAATAAACAGGCTACAGTAAAGGAAGTTGAGGAAATTTTCGCAAGATATGGACGGGTTGAAGATGTTTATCTTATGCGTGATGAGAATAAGCAGAGCCGTGGATGTGGTTTTGTTAAATACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCACTTAATGGAATTTACACAATGAGAGGCTGTGAACAACCTTTGACTGTCCGATTTGCTGATCCTAAGAGACCTCGGCAAGGGGATTCAAGGGGTCCTGCATTTGAAGCACCGGGTCCTAGGCCTCCATCCAATTTTACTGATCCTATAGGGGATCGAATCCCACCTCCCAATGCTTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAACACTGGTCTTCAAAGCATGAGGCCTCCATTGCTTCCAAGATCTGGTGACATGGCACTGTCTATGAATGCAGGTGGTCATATGAGTGGCATTGGAGGTCCTTCAGATGGTCCTTTTCAAAGACAGGCTCCGTCATCAATGTCACAACAGAATTTCAACCAACCCATGCCACAAATTCCATTGGCTGGCCAACAATTATCGTCATTGCAGAAGCCTATTCAATCACCTCAGGACTTGCCACCTTCCGTCCAGCTGTACCCTCCAGCCCCAATGCCCCATTCGCAAACATTGTCTCTTGCATCACTTAGGCAGGTTGGCCAGCCACAACTTCCTCCATCTGCTGGTCCTCTTCTTTCACAGCAGGTACATGGTTTAAATGGACAGTTTCCAGCGTCTCAGCTTCAAGCTCAGCAGAGTGCTTCATCTGCTGCAATGGCCCAGGCCCCTCTTGCTACCAGCTTGCAAGCTAATACAACATTGACCGCTCCAAATCAACAGCAACTTTCTGCCTCTATGCAGCAGCTGCCACTTCAGCCTCCTCAGCAGTCCCCATCACAGTTAGCTCAAATGTTGTCACAACAAACTCAGACTTTGCAAGCAAGCTTCCATTCATCTCAGAAGGCCTTCTCTCAGCTCCAACAACAGCTACAAATGATGCAACCATCTAGCCAAGGTTTAACATTGCAGCAAAACTCAGAATCTAAGCAGTCTCAATGGACCAGGGCTGTACAACAGGCAGTGGCCAGCACCCCTGCTGCTGCAGATGTACATTCGTCTACATCTTCTGCTGCTTCTGTACCTACGATAAGCCAGAACATAGTTCCTGCACAAAGTAATTGGACGGAGCATGTATCTCCTGAGGGCTTCAAGTACTATCACAATAGTGTCACTGCTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATCATCTGAACAGCAAAAGCAACAGGAAAGGGCATCTGCTCAGCAATCTCAAAATCAGTCACAACTTCCATTATCATCCCCCCAGCAAGTTCCACAAATGCAACAGTTGCAGCCTCAAGGTTATCTCCAGGGACAGGTTCTCCACCAGCAACAGTACCAGGCATATGGAGTTGCAGGCCATCAAAATGTTCAGGGGATCTATGCAACGCAAGAGTGGATGTGGAAAAATAAACCAGCAGGCTCCAGTTCTTTCACCTGA 2877 0.4984 MAITILERDSPSSSHRIFVVNLHGTDITVTVTAEASVARRWIYSALHIYRQFLSCLVVGLGVQWTPGDRNSPADTLQLCIGRRCLIYQLAQTDYVPNILRRFLMNPCHTFVGFWNHSDRRKLEISNHKLEMLRDPLDLRKYVETDDNESLTGASMEEIVEECLGFSGVSLRREISMSDWDDEYLSEDQVLQASLDAYCAFEIGRNNRAWKYTRPVSGFILEAKLDRHRGDRYGNNHDAHPYRHSRAPSRFSDAPFNHQGGFRSGGGAHHRPFDSPPHRSPGRGAGFRPPGGGGGDGFRPLSGEGPGGFGFNSHQVPPLTGQKRGFPFSGRGGSPDRFDGGSFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYASLEEADRAIRALHNQHNLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFARYGRVEDVYLMRDENKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLTVRFADPKRPRQGDSRGPAFEAPGPRPPSNFTDPIGDRIPPPNAWRPMHPPNMGPSSNTGLQSMRPPLLPRSGDMALSMNAGGHMSGIGGPSDGPFQRQAPSSMSQQNFNQPMPQIPLAGQQLSSLQKPIQSPQDLPPSVQLYPPAPMPHSQTLSLASLRQVGQPQLPPSAGPLLSQQVHGLNGQFPASQLQAQQSASSAAMAQAPLATSLQANTTLTAPNQQQLSASMQQLPLQPPQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLTLQQNSESKQSQWTRAVQQAVASTPAAADVHSSTSSAASVPTISQNIVPAQSNWTEHVSPEGFKYYHNSVTAESRWEKPEELTSSEQQKQQERASAQQSQNQSQLPLSSPQQVPQMQQLQPQGYLQGQVLHQQQYQAYGVAGHQNVQGIYATQEWMWKNKPAGSSSFT 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0482 958 Gene3D - 839 886 - -
Glsi13g0482 958 ProSitePatterns WW/rsp5/WWP domain signature. 844 869 IPR001202 GO:0005515
Glsi13g0482 958 MobiDBLite consensus disorder prediction 737 758 - -
Glsi13g0482 958 SUPERFAMILY RNA-binding domain, RBD 326 428 IPR035979 GO:0003676
Glsi13g0482 958 SMART ww_5 839 871 IPR001202 GO:0005515
Glsi13g0482 958 Gene3D - 13 205 IPR036397 GO:0003676
Glsi13g0482 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 514 IPR000504 GO:0003723
Glsi13g0482 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 407 IPR000504 GO:0003723
Glsi13g0482 958 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 503 IPR000504 GO:0003723
Glsi13g0482 958 CDD WRN_exo 32 204 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 878 908 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 229 332 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 866 908 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 776 807 - -
Glsi13g0482 958 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 424 IPR000504 GO:0003723
Glsi13g0482 958 FunFam Flowering time control protein FCA 430 520 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 510 658 - -
Glsi13g0482 958 SUPERFAMILY WW domain 843 874 IPR036020 GO:0005515
Glsi13g0482 958 FunFam flowering time control protein FCA isoform X2 337 429 - -
Glsi13g0482 958 Gene3D - 339 430 IPR012677 -
Glsi13g0482 958 Gene3D - 431 522 IPR012677 -
Glsi13g0482 958 Coils Coil 872 892 - -
Glsi13g0482 958 CDD WW 842 871 IPR001202 GO:0005515
Glsi13g0482 958 MobiDBLite consensus disorder prediction 603 644 - -
Glsi13g0482 958 SUPERFAMILY Ribonuclease H-like 40 205 IPR012337 -
Glsi13g0482 958 SMART rrm1_1 435 510 IPR000504 GO:0003723
Glsi13g0482 958 SMART rrm1_1 344 420 IPR000504 GO:0003723
Glsi13g0482 958 PANTHER RNA BINDING PROTEIN 295 797 - -
Glsi13g0482 958 MobiDBLite consensus disorder prediction 229 246 - -
Glsi13g0482 958 SUPERFAMILY RNA-binding domain, RBD 434 535 IPR035979 GO:0003676
Glsi13g0482 958 ProSiteProfiles WW/rsp5/WWP domain profile. 838 871 IPR001202 GO:0005515
Glsi13g0482 958 Pfam WW domain 842 869 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0482 Glsi-ChrGlsi13 23489690 23511328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0482 341 538 Eukaryotic Initiation Factors Gene Family AT1G71770 26.244 1.61e-14 75.9