LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0481	ATGGTTAATGGGTTGACGTGGCAATTATGTCAGCAACGGAGAAACTTAACGACGCAGAAAGTGAGGCATGGAATGCACGTGCCGAAGATTCGTAAAGACGAGGGCGGAATATGCAATAGGAAATCAATGGAGGAAAAGAAGAGAGAGGCAGAGCCCAAGTCTTCCATGGCATTTTCCGATGAGATTCTCAGCTCTGGCTTCACTTTCCCACAAGCTGCTTTTTCTACCAGCATCTTGGATCAACCTGAAAAAGCTTCCTTTGGGTTCGTGGACTTACTGGGCGTCCAAGATTATACCCCTTCTATATTCGATTGGTTTCCCACCATCACTACTACGACATCGTCGTCCGCCGCAGTCCACCACCTCCCCATCCCGTCGCCGGCGAGCTCCGGCGTCCCAGAATCCTCCGGGGTGTTGAATACTCCGGCGTCCCCCAATTCCTCCTCGATTTCGTCGTCGTCCAACGAGGAACAGAGTAATAAAGCAGGAAATGAACGTGAAACAGAGGATGAAGATGCAGATGGAAGCAGAGGAGACGACCAAGATCAAGACAAAGCTAAGAAACAGCTGAAACCCAAAAAGAAGAACCAAAAGAAGCAAAGAGAACCCAGATTCGCCTTCATGACAAAGAGCGAAGTTGATCATCTTGACGATGGCTACAGATGGCGCAAGTACGGCCAAAAAGCTGTTAAAAACAGCCCCTATCCCAGGAGCTATTATCGTTGCACCACAGCAGGTTGCGGGGTGAAGAAGAGGGTGGAGCGATCCTCCGACGACCCTTCCGTGGTGGTCACCACCTACGAGGGGCAGCACACGCACCCGAGTCCCGTGGCGGCGTCGCGGGCTGGCCTCAGGTTCATGCACGAAGCTGCGGTTGCAGGGTTCGGACCCACAACTAGGTTTGGTAGTGGTGGTGGTGGTCTTGGTTCTTCACACTTTATGGTTCCACAGGCACAGCATCATGAGTTTGCGCAAGCATCAGCTTTGTTGTATACCTCAAACCCACCTTCGAGCATTAGCTCTACGAGCTATATGAATGCGGCGACGGCGTCGTTTAGTAATAGCTACCTTCTGCAACAGAATCATAATTTAGGGTTTGGAAGAGGAGGAGGCAGATCATCGGCTCAAGCTCTGTTAAGGGACAATGGGCTTCTTCAGGACATTCTCGTGCCATCCCAGATGAGGATGGAGGAGAAGGAAGAAGAGTAG	1209	0.512	MVNGLTWQLCQQRRNLTTQKVRHGMHVPKIRKDEGGICNRKSMEEKKREAEPKSSMAFSDEILSSGFTFPQAAFSTSILDQPEKASFGFVDLLGVQDYTPSIFDWFPTITTTTSSSAAVHHLPIPSPASSGVPESSGVLNTPASPNSSSISSSSNEEQSNKAGNERETEDEDADGSRGDDQDQDKAKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHPSPVAASRAGLRFMHEAAVAGFGPTTRFGSGGGGLGSSHFMVPQAQHHEFAQASALLYTSNPPSSISSTSYMNAATASFSNSYLLQQNHNLGFGRGGGRSSAQALLRDNGLLQDILVPSQMRMEEKEEE	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0481	402	MobiDBLite	consensus disorder prediction	127	208	-	-
	Glsi13g0481	402	SUPERFAMILY	WRKY DNA-binding domain	208	276	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi13g0481	402	Pfam	WRKY DNA -binding domain	217	274	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi13g0481	402	Gene3D	WRKY domain	200	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi13g0481	402	ProSiteProfiles	WRKY domain profile.	211	276	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi13g0481	402	SMART	WRKY_cls	216	275	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi13g0481	402	MobiDBLite	consensus disorder prediction	129	159	-	-
	Glsi13g0481	402	FunFam	WRKY transcription factor 57	202	276	-	-
	Glsi13g0481	402	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	129	332	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0481	Glsi-ChrGlsi13	23476124	23480939	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0481	56	398	WRKY Transcription Factor Family	AT2G47260	39.891	8.88e-56	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi13g0481		WRKY	3.9e-27	CL0274