Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0470 ATGATCTTGTTCTGCTTAACGTGCCCTACTTTTGGCTTGGTTAAAGAACAAGTTATAGACGCTCCTTTGTTAACAGAAAAGCTAAAAATGGTTACTAATCTTACTATCAAGGTTGATATCAATGGCGATGGGGAGTTCAGATCTATCCAAGCTGCCATAGACTCTATCCCTGAAGGAAACTCTAAGTGGACCATCGTTAATTCATAAAAGGTACACATCCCAAAGAGTAAGCCTTACATATTCATGAGAGGAAATGGGAGAGGAAGAACTGCCATAGTTTGGTCTAAGAGTTCTGAAGACAATGTGGCTTCTGCTACCTTCAGGGCCGAAGTCCCTAACTTTATTGCCTTTGGAGTTAGATTCATGAATGAAGCACCCACAGGGGTTGCTTATACATCGCAGAACCAATCAGTGGCTGCATTTGTAGCAGCAGACAAGGTGGCTTTCTACCATTGTGCATTTTATAGCACTCACAACACTCTCTTTGATTACAAAGGGAGGCATTACTATGAATCTTGCTATGTTCAAGGTTCTATTGATTTCATCTTTGGTCGTGGCAGATCTCTTTACCATAACACAGAGATATTTGTGATAGATGACAAAAGGGTACCATTTCATGGGTCAATCACAGCTCAAAACAGGGAAAGTGCTTCTGAGAAAAGTGGGTTTGTGTTTAACAAAGGCACGGTCTATGGCATTGGTGGAGTGTACCTAGGAAGGGCCAAGGGTGCCTATTCTAGGGGCAAACTAGCATTTATTTCATTAATATATAGAATGCTTTTGCATCCATACAAAGAAGGGCAGGCGAGCTGCACATTGCATAGGCATGAATAA 834 0.4149 MILFCLTCPTFGLVKEQVIDAPLLTEKLKMVTNLTIKVDINGDGEFRSIQAAIDSIPEGNSKWTIVNSXKVHIPKSKPYIFMRGNGRGRTAIVWSKSSEDNVASATFRAEVPNFIAFGVRFMNEAPTGVAYTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDYKGRHYYESCYVQGSIDFIFGRGRSLYHNTEIFVIDDKRVPFHGSITAQNRESASEKSGFVFNKGTVYGIGGVYLGRAKGAYSRGKLAFISLIYRMLLHPYKEGQASCTLHRHE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0470 277 ProSitePatterns Pectinesterase signature 2. 175 184 IPR033131 -
Glsi13g0470 277 Pfam Pectinesterase 37 233 IPR000070 GO:0030599|GO:0042545
Glsi13g0470 277 SUPERFAMILY Pectin lyase-like 31 249 IPR011050 -
Glsi13g0470 277 Gene3D - 14 266 IPR012334 -
Glsi13g0470 277 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0470 Glsi-ChrGlsi13 23345045 23347538 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0470 36 247 Carbohydrate Esterase AT5G47500 40.611 3.88e-46 157