Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0467 ATGGGAACCCCTCCAACAGAAGAGCTTCTCAAGAAGATCGAAGACCTCGAGGCGGGTCACGCCCACCTCAAGCAAGAAATGTCCAAACTTAAGGTCTCTGGCGCGAGGGATGCCAGAGCGGACCAGGGTCATCGCCAGAGGTCTCATTCCATATCACCGCAGCGTTCGAGATTTGGGGCTCCCGGGAGGAGAGTTGGGGATGGGGGATTGGACAGAGCAGCTTCATTGAAGAAAGGATCGTCTTCGTTCAAACATTCGTCGCCGCTGCAGAGGGAGAGCCGCAGTGGTGATCGTCAAGATGATGGAGAAGGTGACCTTCGCAGTGGACCTTCAGCTGTTAATTTTACCGATAGACAGTATATGAATATTTTGCAGTCAATGGGACAGTCAGTTCATATATTGGATCTTAACTGCCGCATAATATACTGGAGCCATGGTGCTGAAAATCTATATGGTTTTTCAGCGGAGGAAGCTCTTGGTCAGGATGCCATCGAGCTGCTTGTAGACCCAGGGGATTTCACCTTGGCTAATAAAATAGTCAACCGTGTCATAATGGGAGGGAGCTGGACTGGGCAGTTCCCTGCCAAGAATAAGATGGGGGAGAAAATTTTTTCTGTTTCAACCAATACTCCTTTGTATGGTGATGATGGAAGTTTGGTTGGGCTAATTTGTGTCTCAAGTGATTCACGAGCCTTTCTTGAAATGAGAGTTCCATTATCAGGTGTGAAGCACTTTGAACAAGATTCAGGCTCCAACATTCCTAGTAGTAGCATTACAACTAAACTTGGTTTTAACTCTCAACCGCCACTTCAAGTTGCTCTAGCCTCAAAATTTTCCAATGTGGCATCAAAGGTGAGTAACAAAGTCAAGCCAACAATCCGAACTGGAGAAAATAATGGGGATCGTGAAGGTGGGAGCAGAGAAAGTCATCATTCTGAGCATAGTTTCTCAGATTGTGTTATTTCTAACCAGAGAGAGGATGCAAATTCCAGTGGAGCTAGCACACCCAGAGGAGATGTACCCCCATCTCCTTTTGGTGAATTTTATCATGCTGAAGATATATCCCAAGGAAAATCTTTGAAAGACTCTGGTGATGAAAGTGAAGCAAAAACCATTCACAGGATCTTTACTTCCGAGGCAGAAGCATGGATTCAAAAGAAAACATTATCATGGTCATGGAAAGCAAATGAGCTAGAAGGGTCAGAGGCAAATAATGTCTCTGTTGCTTGGCCTTGTTTGCAGAATGATCAAGAAAATGAACCAGTTAATGGGAAGATTCTTTCTTCTGTCTTCAAGCCAGAAAGCCAGGCAGATGAAGGTAATCAACCTGTTAATAACGAGGCCTCAGGATCCTGGTCCTCCTTTAATTTTAACAGCATGGGCAGTGCCAGCAGCTGTGAGAGTGCTGTCAATAATAAAGCGGATGTGGATGCTGATTGTTTGGATTGTGAAATCTTGTGGGAGGACCTGACAATCGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCCATGTGGTATGGATCAGATGTGGCTCTCAAGGTGTTCTCCAATCACGACTACACAGAAGATGTGATACTGTCGTTCAGACAAGAGGTGTCTCTTATGAAAAGACTTCGGCATCCAAATGTTCTTCTATTTATGGGGGCAGTGACTTCACCTCAACGTCTCGGCATTGTAACCGAGTTCCTACCGCGCGGAAGCTTGTTTTGCTTGCTACAGAGAGAAAAATCCAAGTTTAACTGGAGACGACGAGTTCATATGGCCTTAGATATTGCACGAGGTGTAAACTATCTTCACCATTGCAACCCCCCTATCATTCATCGTGATTTGAAGTCTTCAAATCTTCTAGTTGATAGGAACTGGACTGTTAAGGTTGGTGATTTTGGTCTTTCGTGTCTTAAGCATGAAGCATTTCTCACAACTAAGACAGGAAAGGGCACGCCTCCATGGATGGCACCAGAAGTTCTTCGTAATGAACCAGCAGATGAGAAATCTGATGTATACAGCTTTGGGGTGGTACTGTGGGAACTTGCAACTGAAAAGATTCCTTGGGATACTCTGAACTCAATACAGGTGATTGGAGCTGTAGGGTTCATGAACCATAGGCTTGAAATTCCAAAAGATATTGATCGAAGGTGGGCTGATATGATTGAGAGCTGCTGGCACAGTGATCCAGCTTGCCGGCCAACATTCCAAGAACTGCTGGAAAGGCTTAAGAAGATGCAGAGATGGTATGCCATTCAGTTGCAGGCAGGCAAATCTGCTGGTGGGGAAAGCACCCAAAAGGTGTCACAGACACGATCTTAG 2319 0.4528 MGTPPTEELLKKIEDLEAGHAHLKQEMSKLKVSGARDARADQGHRQRSHSISPQRSRFGAPGRRVGDGGLDRAASLKKGSSSFKHSSPLQRESRSGDRQDDGEGDLRSGPSAVNFTDRQYMNILQSMGQSVHILDLNCRIIYWSHGAENLYGFSAEEALGQDAIELLVDPGDFTLANKIVNRVIMGGSWTGQFPAKNKMGEKIFSVSTNTPLYGDDGSLVGLICVSSDSRAFLEMRVPLSGVKHFEQDSGSNIPSSSITTKLGFNSQPPLQVALASKFSNVASKVSNKVKPTIRTGENNGDREGGSRESHHSEHSFSDCVISNQREDANSSGASTPRGDVPPSPFGEFYHAEDISQGKSLKDSGDESEAKTIHRIFTSEAEAWIQKKTLSWSWKANELEGSEANNVSVAWPCLQNDQENEPVNGKILSSVFKPESQADEGNQPVNNEASGSWSSFNFNSMGSASSCESAVNNKADVDADCLDCEILWEDLTIGEQIGQGSCGTVYHAMWYGSDVALKVFSNHDYTEDVILSFRQEVSLMKRLRHPNVLLFMGAVTSPQRLGIVTEFLPRGSLFCLLQREKSKFNWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSCLKHEAFLTTKTGKGTPPWMAPEVLRNEPADEKSDVYSFGVVLWELATEKIPWDTLNSIQVIGAVGFMNHRLEIPKDIDRRWADMIESCWHSDPACRPTFQELLERLKKMQRWYAIQLQAGKSAGGESTQKVSQTRS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0467 772 CDD STKc_MAP3K-like 496 742 - -
Glsi13g0467 772 Gene3D PAS domain 128 232 - -
Glsi13g0467 772 SUPERFAMILY PYP-like sensor domain (PAS domain) 122 225 IPR035965 -
Glsi13g0467 772 MobiDBLite consensus disorder prediction 316 337 - -
Glsi13g0467 772 MobiDBLite consensus disorder prediction 90 105 - -
Glsi13g0467 772 Pfam Protein tyrosine and serine/threonine kinase 490 742 IPR001245 GO:0004672|GO:0006468
Glsi13g0467 772 MobiDBLite consensus disorder prediction 289 349 - -
Glsi13g0467 772 Gene3D Phosphorylase Kinase; domain 1 483 567 - -
Glsi13g0467 772 MobiDBLite consensus disorder prediction 295 315 - -
Glsi13g0467 772 SMART pas_2 118 185 IPR000014 -
Glsi13g0467 772 MobiDBLite consensus disorder prediction 20 113 - -
Glsi13g0467 772 SMART serkin_6 490 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0467 772 MobiDBLite consensus disorder prediction 20 48 - -
Glsi13g0467 772 Gene3D Transferase(Phosphotransferase) domain 1 568 771 - -
Glsi13g0467 772 FunFam PAS domain-containing protein tyrosine kinase 483 567 - -
Glsi13g0467 772 Coils Coil 6 33 - -
Glsi13g0467 772 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 121 745 - -
Glsi13g0467 772 FunFam PAS domain-containing protein tyrosine kinase family protein 568 759 - -
Glsi13g0467 772 CDD PAS 127 228 IPR000014 -
Glsi13g0467 772 SUPERFAMILY Protein kinase-like (PK-like) 479 742 IPR011009 -
Glsi13g0467 772 ProSiteProfiles PAS repeat profile. 116 187 IPR000014 -
Glsi13g0467 772 Pfam PAS fold 119 225 IPR013767 GO:0006355
Glsi13g0467 772 ProSiteProfiles Protein kinase domain profile. 490 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0467 772 PRINTS Tyrosine kinase catalytic domain signature 669 691 IPR001245 GO:0004672|GO:0006468
Glsi13g0467 772 PRINTS Tyrosine kinase catalytic domain signature 603 621 IPR001245 GO:0004672|GO:0006468
Glsi13g0467 772 PRINTS Tyrosine kinase catalytic domain signature 713 735 IPR001245 GO:0004672|GO:0006468
Glsi13g0467 772 PRINTS Tyrosine kinase catalytic domain signature 564 577 IPR001245 GO:0004672|GO:0006468
Glsi13g0467 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Glsi13g0467 772 NCBIfam PAS domain S-box protein 118 226 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0467 Glsi-ChrGlsi13 23315699 23323088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0467 1 759 MAP Kinase Kinase Kinase AT3G06620 56.450 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi13g0467 PK_Tyr_Ser-Thr 4.2e-63 CL0016