Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0466 ATGGTTAGATTGATAGAAACAGCCGCCGCTCCCATATTTGCTGTAAATGTTGATGGCCAGATAAATGGGTGGAATGCAAAGGTTGCAGAATTAACAGGACTCTCAGTTGAGGAAGCTAAAGGGAAGTCCTTGGTTCGTGATCTTGTGTATAAGGAGTCTGAAGAAACAGTAGACAGACTTCTTTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAGGACGTTTGGCCCAGAACATCACACGATGGCAGTTTTTATAGAGGTGAATGCTTGCTCCAGCAAGGATTATATGAATAATATAGTTGGAGTATGCTTTATTGGTCAGGATATTACTGGTCAAAAAGTGGTGATGGACAAATTCATTCACTTACAAGGTGACTACAAGGCTATTTTACACAGCCCAAATCCATTGATCCCTCCCATTTTTGCATTAGATGATAACACATTCTGCTCAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGTTCGTAGGGAGGTCATCGGGAAATTGTTGGTAGGAGAGGTTTTTGGCAGTTGCTGTCCCCTGAAGGGTTCAAATGCTCTAACCAAGTTCTTGATTTTCTTGCACAAAGTGCTTGGTGGACAGGATACAGATAAATTCCCACTTTCATTCCTTGATCGCCACGGAAAATATGTGCAAGCTCTCTTGACTGCAAATAAAAGAGTTAACCAGGATGGTCAGATAGTTGGGGCTTTCTGCTTCTTGCAAACTGCGAGTCCTGAACTTCAACAGGCTCTCAAAGTCCAGAGGCAACAGAAGAAGGATTGCTTTGCTACGATTAAAGAATTAGCTTACATTTGTCAGGAAATAAAGAATCCTTTGAGCGGTATACGCTTTACAAACTCTCTTTTGGAGGGTACCGACTTGACTGATGATCAAAATCAGATTGTCGAGGCTAGTGCTGCTTGTGAGAAGCAGATGTTCAGGATAATACAAGATGTTGATCTGGAGAGCATTGAGGATGGGTCCTTGGAGCTTGACGAGGGGGAATTCTTACTCGGGAGTGTATTAAATGCTGTCGTTAGCCAAGTGATGCTATTGCTGAGAGAGAGAAATTTACAGTTGATTTGTGATATTCCTGAAGAAATCAAGACCTTGACCGTTTATGGTGATCAATTTAGGATTCAACAGGTCTTGGCTGATTTTTTATTGAATATAGTGCGCTATGCACCGTCTCCAGATGGCTGGGTAGAGATTCTTGTTTGTCCAACATTAAAACAAATCTCAGATGGACTTACTCTTCTCCATGCTAAGTTCAGGATGGTGTGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAGATATGTTCTATAGCAGTTGGTGGGAGAGTCAAGAGGGGTTAGGGCTCAGCATGAGTAGGAAGATTCTAGAGCTAATGAATGGCGAAGTCCAATATATCAGGGAGGTGGAAAGATGCTACTTCTTAATTATTCTCGAACTACCCTTGACTCGTTGA 1500 0.4207 MVRLIETAAAPIFAVNVDGQINGWNAKVAELTGLSVEEAKGKSLVRDLVYKESEETVDRLLSRALRGEEDKNVEIKLRTFGPEHHTMAVFIEVNACSSKDYMNNIVGVCFIGQDITGQKVVMDKFIHLQGDYKAILHSPNPLIPPIFALDDNTFCSEWNTAMEKLTGWVRREVIGKLLVGEVFGSCCPLKGSNALTKFLIFLHKVLGGQDTDKFPLSFLDRHGKYVQALLTANKRVNQDGQIVGAFCFLQTASPELQQALKVQRQQKKDCFATIKELAYICQEIKNPLSGIRFTNSLLEGTDLTDDQNQIVEASAACEKQMFRIIQDVDLESIEDGSLELDEGEFLLGSVLNAVVSQVMLLLRERNLQLICDIPEEIKTLTVYGDQFRIQQVLADFLLNIVRYAPSPDGWVEILVCPTLKQISDGLTLLHAKFRMVCPGEGLPPELIQDMFYSSWWESQEGLGLSMSRKILELMNGEVQYIREVERCYFLIILELPLTR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0466 499 PRINTS Phytochrome signature 19 34 IPR001294 GO:0006355|GO:0009584
Glsi13g0466 499 PRINTS Phytochrome signature 113 133 IPR001294 GO:0006355|GO:0009584
Glsi13g0466 499 PRINTS Phytochrome signature 93 110 IPR001294 GO:0006355|GO:0009584
Glsi13g0466 499 SMART HisKA_10 272 336 IPR003661 GO:0000155|GO:0007165
Glsi13g0466 499 ProSiteProfiles Histidine kinase domain profile. 279 499 IPR005467 -
Glsi13g0466 499 Gene3D PAS domain 1 119 - -
Glsi13g0466 499 ProSiteProfiles PAS repeat profile. 1 68 IPR000014 -
Glsi13g0466 499 Pfam His Kinase A (phospho-acceptor) domain 277 336 IPR003661 GO:0000155|GO:0007165
Glsi13g0466 499 FunFam Phytochrome 144 252 - -
Glsi13g0466 499 ProSiteProfiles PAS repeat profile. 131 183 IPR000014 -
Glsi13g0466 499 FunFam Phytochrome 1 125 - -
Glsi13g0466 499 Gene3D - 336 498 IPR036890 -
Glsi13g0466 499 CDD PAS 142 250 IPR000014 -
Glsi13g0466 499 FunFam Phytochrome 335 499 - -
Glsi13g0466 499 CDD PAS 8 115 IPR000014 -
Glsi13g0466 499 SMART HKATPase_4 384 499 IPR003594 -
Glsi13g0466 499 Gene3D PAS domain 144 251 - -
Glsi13g0466 499 NCBIfam PAS domain S-box protein 4 119 IPR000014 -
Glsi13g0466 499 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 347 496 IPR036890 -
Glsi13g0466 499 SMART pas_2 130 200 IPR000014 -
Glsi13g0466 499 SMART pas_2 1 66 IPR000014 -
Glsi13g0466 499 Gene3D - 252 335 - -
Glsi13g0466 499 SUPERFAMILY PYP-like sensor domain (PAS domain) 6 117 IPR035965 -
Glsi13g0466 499 CDD HisKA 277 328 IPR003661 GO:0000155|GO:0007165
Glsi13g0466 499 Pfam PAS fold 1 115 IPR013767 GO:0006355
Glsi13g0466 499 Pfam PAS fold 131 250 IPR013767 GO:0006355
Glsi13g0466 499 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 384 496 IPR003594 -
Glsi13g0466 499 PANTHER TWO-COMPONENT HISTIDINE KINASE 238 479 - -
Glsi13g0466 499 SUPERFAMILY PYP-like sensor domain (PAS domain) 145 248 IPR035965 -
Glsi13g0466 499 FunFam Phytochrome 253 334 - -
Glsi13g0466 499 CDD HATPase_Phy-like 383 495 IPR044767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0466 Glsi-ChrGlsi13 23308621 23312667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0466 1 497 Histidine Kinase Gene Family AT4G16250 69.416 0.0 727