Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0465 ATGTCCCTTGCTAGGACGGTGCGGTCTCAGAAGCTGGTGGGGCGTGCAATTTCGCAGTTAAAATCGCTTCCTGGTGGAGATGTTAAGCTTTTTTGTGACACTGTAGTTGAGAGTGTCAGAGAACTTACCGGGTATGATAGGGTAATGCTGTATAAACTTCACGAGGATGAGCATGGTGAGGTTCTCGCTGAGAGTAAGAGGCCAGATTTGGAGCCCTTCATCGGTTTGCACTATCCAGCTACTGATATTCCTCAGGCTTCAAGGTTTTTGCTCAAGCAGAACCGGGTTAGGATGATTATGGACTGCCATGCCACTCCTGTTCGCGTAATTCAGGATAAAAGTCTTCAGCGGCCACTGTGTTTGATAAAATCAACCCTTCGCGCCCCACATGGTTGTCATGCCCAGTATATGGCCAATATGGGTTCAACTGCTTCATTAGTTATGGCAGTCACAATCAATGGGAATGACAAGGAAGGTGTTGGCAATTGTAACTCAATGAGGCTATGGGGCCTGGCTGTTTGCCATCACACTTCACCTCGATGCATTCCTTTCCCTCTACGCTATGCATGTGAATTCCTTATGCATGCCTTTGGGCTCCAACTGAATGTGGAACTTCAATTGGCCTCACAGTTATTGGAAAAACAAGTTTTAAAGATCCAGAGTCTCCTGTGTGACATGCTTGTAAGGGACTCTCTCACTTGCATTGTTACTCAAACCCCTAGTATTAAGGACATTATGAAGTGTGATGGAGCAGCTCTCTACTACCAAGGAAACTACTACCCCTTAGGCATCACCCCAACTGAGTCCCAGGCAAGGGACATTATAGAGTGGTTACTAGCCTTCCATGGAGATTCAACAGGCTTAAGTACTGATAGTCTGGCTGATGCAGGTTATCCTGGAGCGGCCTCTCTTGGTGATGCAGTTTGTGGTATGACTGTTGCTTATATCACAGAAAAGGACTTTCTGTTCTGGTTCAGATCCCGTACAGAAAAAGAGACCAAATGGGGTGGTGCAAAGCATCATCCAGAGGACAAGGATGATGGACAGAGGATGCATCCACTATCTTCATTCAAGGCATTTTCGGAAGTGGTAAATGGCGAGAGTTTCCCATGGGAGAATGTGGAAATGAATGCAATTCACCCTTTGCAGCTGATTCTGCAGGACTTAATTAAAGATGCAGAGCATAGCAATTCTAGGTCCGTTGTACATTCGCACCTTGGGCGCCAGGAATTGAAATAG 1239 0.4625 MSLARTVRSQKLVGRAISQLKSLPGGDVKLFCDTVVESVRELTGYDRVMLYKLHEDEHGEVLAESKRPDLEPFIGLHYPATDIPQASRFLLKQNRVRMIMDCHATPVRVIQDKSLQRPLCLIKSTLRAPHGCHAQYMANMGSTASLVMAVTINGNDKEGVGNCNSMRLWGLAVCHHTSPRCIPFPLRYACEFLMHAFGLQLNVELQLASQLLEKQVLKIQSLLCDMLVRDSLTCIVTQTPSIKDIMKCDGAALYYQGNYYPLGITPTESQARDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMTVAYITEKDFLFWFRSRTEKETKWGGAKHHPEDKDDGQRMHPLSSFKAFSEVVNGESFPWENVEMNAIHPLQLILQDLIKDAEHSNSRSVVHSHLGRQELK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0465 412 SUPERFAMILY GAF domain-like 213 390 - -
Glsi13g0465 412 Gene3D - 210 383 IPR043150 -
Glsi13g0465 412 Pfam Phytochrome region 218 392 IPR013515 GO:0006355|GO:0009584
Glsi13g0465 412 FunFam Phytochrome 210 339 - -
Glsi13g0465 412 Gene3D PAS domain 102 130 - -
Glsi13g0465 412 PANTHER OS08G0260000 PROTEIN 7 406 - -
Glsi13g0465 412 Gene3D - 8 366 IPR029016 -
Glsi13g0465 412 ProSitePatterns Phytochrome chromophore attachment site signature. 127 136 IPR013516 -
Glsi13g0465 412 PRINTS Phytochrome signature 320 339 IPR001294 GO:0006355|GO:0009584
Glsi13g0465 412 PRINTS Phytochrome signature 353 371 IPR001294 GO:0006355|GO:0009584
Glsi13g0465 412 PRINTS Phytochrome signature 127 148 IPR001294 GO:0006355|GO:0009584
Glsi13g0465 412 PRINTS Phytochrome signature 235 255 IPR001294 GO:0006355|GO:0009584
Glsi13g0465 412 PRINTS Phytochrome signature 42 61 IPR001294 GO:0006355|GO:0009584
Glsi13g0465 412 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 27 195 IPR016132 -
Glsi13g0465 412 SUPERFAMILY GAF domain-like 6 202 - -
Glsi13g0465 412 Pfam GAF domain 28 205 IPR003018 GO:0005515
Glsi13g0465 412 SMART gaf_1 27 215 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0465 Glsi-ChrGlsi13 23307352 23308590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0465 1 402 Histidine Kinase Gene Family AT2G18790 73.333 0.0 640