Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0446 ATGGAGCTTCAGAGGCGCCAAGATCAGGGCCTCTCGGAGAGGAAAGGACAGAAGCGGAAGCTGGAGGAGGAATTGGAAGAGGAGTCAGAGATCTCGGCGCCACCCACCGGCGAAGCCCGGGAAGCGTTGCTCGTCGAGGTGAGGGAGCAGGTTGGTATCCTGGACTCCACTTTCTCATGGAAGGAAGCCGATCGAGCCGCGGCTAAGCGCGCCACTCACGTCCTCGCTGAGCTTGCTAAGAATGAAGAAGTGGTGAACGTGATTGTTGACGGAGGCGCAATTCCGGCTTTGGCTAAGCATCTTCAAGCTCCGCCTTTGAGTGAAAACGATCGTGGTCAGAAGCCATTTGAGCACGAGGTTGAAAAAGGGAGTGCTTTCGCTCTTGGACTTCTTGCCGTCAAGCCAGAACATCAACAACTTATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTGTTAAAGAGGCATAATAATAGCTGTACTTCTCGTGCTGTGAATAGTGTCATTCGTAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAAAACAGCAGCATTAAAACCTGTGTCAGGATGGAAGGTGGGATTCCACCACTTGTTGAGTTGCTTGAATTGACTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGGACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAGTGCAATGCTCTTCCAACACTGATTCTAATGCTTCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTTCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCTGTGATTGGATTACTTAGATCCTGCTGCTCTGAAAGCCAAAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCCACTGATTCAGATTGCAAGGTTCACATTGTACAGCGTGGTGCTGTTCCACCTCTGATAGAGATGCTTCAATCCCCTGATGTACAGCTCAGAGAAATGGCTGCCTTTGCATTGGGGAGATTGGCACAGGACATACATAACCAAGCTGGTATTGCGCACAATGGTGGCTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGATAGGTGGTGTTCAAAGACTGCAAGACGGTGAGTTTATTGTTCAAGCAACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAAAAGATTCATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCTGTCCAAAGAAGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGTGGATGATCAGAGAATAATATTCATTGATAACAATGGTTTGGAGTTGCTCATTGGTCTTCTTGGCTCTTCTAGCACAAAGCAGCAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAACAAAACCATGACTCTGTCTCCCATAGATGCTGCTCCCCTTTCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGAAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCATCGTCAGATGCATTCCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGATATAGAGATTCCAAACATAAGATGGGAGGTTTTTGAGCTGATGATGAGATTCATATATACTGGATCAGTTGATGTTACTTTGGACGTTGCCCAAGATCTCCTCCGAGCTGCTGACCAATATCTCCTAGAAGGACTTAAGAGACTCTGTGAGTACACAATCGCACAGGATATATCACTAGAGAATGTGTCAAGTATGTATGAACTTTCGGAAGCCTTTAATGCAATGTCATTGATGTACACATGCATCCTTTTTATCTTGGAGCAGTTTGATAAATTGAGTGCAAAACCAGGGCACTCTCATCTGATTCAGCGTATAGTACCCGAGATCCGCAATTACTTTGCTAAAGCGCTTACAAAATCTAATTCTCAAAATGTCCGACCCTAG 2118 0.4452 MELQRRQDQGLSERKGQKRKLEEELEEESEISAPPTGEAREALLVEVREQVGILDSTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAIPALAKHLQAPPLSENDRGQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHNNSCTSRAVNSVIRRAADAITNLAHENSSIKTCVRMEGGIPPLVELLELTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLRSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVPPLIEMLQSPDVQLREMAAFALGRLAQDIHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRIGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSVDDQRIIFIDNNGLELLIGLLGSSSTKQQLDGAVALCKLANKTMTLSPIDAAPLSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDVAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAMSLMYTCILFILEQFDKLSAKPGHSHLIQRIVPEIRNYFAKALTKSNSQNVRP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0446 705 Gene3D - 166 272 IPR011989 -
Glsi13g0446 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Glsi13g0446 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Glsi13g0446 705 Pfam BTB/POZ domain 531 633 IPR000210 GO:0005515
Glsi13g0446 705 Gene3D - 273 517 IPR011989 -
Glsi13g0446 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 700 IPR044282 -
Glsi13g0446 705 SUPERFAMILY ARM repeat 65 409 IPR016024 -
Glsi13g0446 705 SMART arm_5 184 224 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 351 391 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 134 182 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 81 133 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 465 506 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 226 266 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 310 350 IPR000225 GO:0005515
Glsi13g0446 705 SMART arm_5 268 308 IPR000225 GO:0005515
Glsi13g0446 705 Gene3D Potassium Channel Kv1.1; Chain A 529 673 IPR011333 -
Glsi13g0446 705 MobiDBLite consensus disorder prediction 1 26 - -
Glsi13g0446 705 SMART BTB_4 538 635 IPR000210 GO:0005515
Glsi13g0446 705 CDD BTB_POZ_ARIA_plant 525 640 - -
Glsi13g0446 705 SUPERFAMILY POZ domain 530 632 IPR011333 -
Glsi13g0446 705 Coils Coil 11 31 - -
Glsi13g0446 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Glsi13g0446 705 MobiDBLite consensus disorder prediction 1 38 - -
Glsi13g0446 705 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Glsi13g0446 705 Pfam Armadillo/beta-catenin-like repeat 135 181 IPR000225 GO:0005515
Glsi13g0446 705 Pfam Armadillo/beta-catenin-like repeat 188 223 IPR000225 GO:0005515
Glsi13g0446 705 Pfam Armadillo/beta-catenin-like repeat 310 349 IPR000225 GO:0005515
Glsi13g0446 705 Gene3D - 51 165 IPR011989 -
Glsi13g0446 705 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Glsi13g0446 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Glsi13g0446 705 FunFam Armadillo/beta-catenin repeat family protein 529 673 - -
Glsi13g0446 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Glsi13g0446 705 SUPERFAMILY ARM repeat 436 613 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0446 Glsi-ChrGlsi13 23089957 23097878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0446 197 401 U-box Gene Family AT1G23030 30.918 6.04e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi13g0446 BTB 4.6e-26 CL0033