Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0440 ATGTTGGCCAGTCATTTCCAAAACGGTATTGAGATGGCGAAGCTCGTTTGGTCGAGAATTCCGAACTCGGAGGAACCCCAGTTCCCCGAAGACGCCGTAGGCATCTTGAAAAAGAGTGATGGAAACTGCGTCGAGAGCCTTGACTATGAAGTCATTGAGAATTATGCTTATCGGGAAGAACAGGCGCAAAGAGGGAAGCTGTATGTGGGCTATTTGCTGGTGATGAAATGGTTCTTTTCCTTGCTCATTGGCATTGGTACTGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAACTTTGCAGGCTGGAAGTTCTCATTGACGTTTAATATAATTCAGAAATCGTATGTGGCTGGCTTTCTTGTATATGTCCTGATCAACTTGGTTTTGGTCTATTCTTCTGTATATATCATCACACAATTTGCACCAGCAGCAGCTGGATCTGGCATTCCTGAAATTAAGGGTTACTTGAATGGAATTGATATTCATGGCATCCTTCTTTTCAGAACCTTGATAGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGCAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTGTTTGCACAAGATGGGTCCACCAAGTTCCATCTAAGTTCGAGGTGGTTTCAAGTAATCAAAACTGATCGGGATCGGCGAGATCTTGTAACCTGTGGGTGTGCAGCTGGAGTAGCAGCTGCATTTAGAGCTCCGGTTGGTGGTGTATTGTTTGCATTAGAAGAGGTAACATCTTGGTGGAAAAGTCAATTGATGTGGCGAGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTGGGTACTGCAATGGGATGGTGTAAAAGTGGAAAGTGTGGACATTTTGGCTCAGGCGGATTCATAATATGGGATTTATCAGATGGTCAAGAGGATTATTCTTTTGCTGAGTTACTGCCTATGGCTGTTATTGGGGTTATTGGAGGTCTGTTAGGAGCCTTATTTAACCAGCTTACTCTGCATGTAACTTCTTGGCGTCGAAATCATCTGCACAAAAAAGGGGCCCGAGTCAAGATTGTTGAAGCATGCCTTGTCTCCTTGTTAACTTCAGTTATTTCATTTGGCTTGCCACTTCTAAGAAATTGTAGTCCATGCCCTGAATCTGATCCTGATTCTGGAATTGAATGTCCACGACCACCTGGAATGTATGGGAATTATGTAAATTTCTTTTGTAGTAAAGAGAAGGAATACAATGACCTTGCCACTATTTTCTTTAATACACAGGACGATGCAATAAGGAATTTGTTCAGTGCAAAAACAATACATGAGTACAGTGCCCAAAGTTTGTTAACCTTTTTGGTTATGTTTTATACTTTAGCAGTCATAACGTTTGGTACTGCAGTTCCAGCTGGTCAATTTGTTCCTGGAATAATGATAGGATCAACGTATGGGCGTCTTGTTGGCATGCTTGTGGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACAAATAACTTAAAACTTTTACCTCTTATCATGCTTGTTCTTCTTATATCTAAGGCTGTTGGTGATGCTTTTAATGAGGGATTTTATGAAGAGCAGGCACGACTGAGGGGCATTCCATTATTAGAATCAAGACCTAAATATGAGATGCGGAACATGATTGCAAAAGAGGCCTGTGGGAGCAGAAGGGTGCTCTCCTTCCCTCGCGTTGTTAAGGTTGCAGATGTAGTTTCCATTCTGCGGAGCAATGAACACAATGGTTTTCCTGTGATTGATCACACAAGAAGTGGAGAACCTCTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTAATTCTGCAGTCAAATGTTGATTTCCAGCATAGTCCTTTGCCTTGTGATCCCAGTCCCAGAGTTGGGGTCAGGCACAATTCTGATGAATTCACAAAGCCTGTTCCTATTAAAAGAATCTGTATAGATGATATACATCCAAGTTCAGATGACCTAGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCACCATATATTGTACCTGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGCCAACTGGGTTTGAGGCATTTATTTGTTGTTCCACGCCCATCTCGTGTACTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGAGTCAGAACACGTGAATACAATAGAGCTTCATCAACTAGCGTAA 2307 0.4174 MLASHFQNGIEMAKLVWSRIPNSEEPQFPEDAVGILKKSDGNCVESLDYEVIENYAYREEQAQRGKLYVGYLLVMKWFFSLLIGIGTGLAAVFINISVENFAGWKFSLTFNIIQKSYVAGFLVYVLINLVLVYSSVYIITQFAPAAAGSGIPEIKGYLNGIDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLFAQDGSTKFHLSSRWFQVIKTDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLMWRVFFTSAVVAVVVGTAMGWCKSGKCGHFGSGGFIIWDLSDGQEDYSFAELLPMAVIGVIGGLLGALFNQLTLHVTSWRRNHLHKKGARVKIVEACLVSLLTSVISFGLPLLRNCSPCPESDPDSGIECPRPPGMYGNYVNFFCSKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVITFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGFYEEQARLRGIPLLESRPKYEMRNMIAKEACGSRRVLSFPRVVKVADVVSILRSNEHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSNVDFQHSPLPCDPSPRVGVRHNSDEFTKPVPIKRICIDDIHPSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEESEHVNTIELHQLA 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0440 768 CDD ClC_6_like 45 574 - -
Glsi13g0440 768 Pfam Voltage gated chloride channel 134 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 SUPERFAMILY CBS-domain pair 579 752 IPR046342 -
Glsi13g0440 768 SUPERFAMILY Clc chloride channel 54 576 IPR014743 -
Glsi13g0440 768 FunFam Chloride channel protein 697 768 - -
Glsi13g0440 768 Gene3D - 592 758 IPR046342 -
Glsi13g0440 768 ProSiteProfiles CBS domain profile. 705 762 IPR000644 -
Glsi13g0440 768 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 752 - -
Glsi13g0440 768 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 505 521 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 470 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 523 542 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 561 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi13g0440 768 Gene3D Clc chloride channel 69 575 - -
Glsi13g0440 768 SMART cbs_1 595 647 IPR000644 -
Glsi13g0440 768 SMART cbs_1 708 756 IPR000644 -
Glsi13g0440 768 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi13g0440 768 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi13g0440 768 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi13g0440 768 PRINTS Plant CLC chloride channel signature 422 438 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi13g0440 768 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi13g0440 768 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 756 - -
Glsi13g0440 768 Pfam CBS domain 597 646 IPR000644 -
Glsi13g0440 768 Pfam CBS domain 706 752 IPR000644 -
Glsi13g0440 768 FunFam Chloride channel ClC3 68 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0440 Glsi-ChrGlsi13 23027400 23036476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0440 1 766 Ion Channels AT5G26240 83.181 0.0 1236