Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0393 ATGGATTCGGAAGTTGTAGTAGGAGGTGTTAAGACACCAAAGATGGATTTGGAAGCAGAAGGAGCTGTGAATTCAAAGATGAAGGAAAGCGGAGACCTTGGCAGTAAAGATAGGATTTTCAGAGCCGATAAAATTGATCTCAAAAGTTTGGATGCCCAGCTGGAAAAGCACTTAAGCAGGGTTTGGTCGATGGACATCGAGTCAAGAAGGCCTAAAGAAGAGTGGGAGATTGATTTGGCTAAATTGAATTTGCGATATGTTGTAGCTCATGGGGCCTATGGTACTGTTTACAGGGGTACCTATGATATCCAAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTATCCACAGCTGCTGAAACTGCTGCTTTACGGGCATCATTTCGGCAGGAGGTTGCTGTCTGGCACAAACTTGACCATCCAAATGTCACAAAATTTGTTGGAGCTTCGATGGGAACTTCAAATCTTAAGATTCCCTCAAAAAACTCGTCAACTGATGGTGAAAATTCCCTTCCTTCTAGAGCATGTTGTGTTGTTGTCGAGTATGTCCCTGGTGGGACACTCAAACAATTCTTGTTCAAAAATCGGCATAAGAAACTTGCTTACAAGGTTGTGGTCCAGCTGGCTTTGGATCTTTCTAGGGGTCTTAGCTATCTACATTCAAAGAAGATTGTACACCGTGATGTCAAAACAGAGAATATGTTGATAAACACTAATAGTGAATTGAAAATAGCTGATTTTGGAGTTGCACGCGTTGAAGCACTCAATCCCAGTGACATGACCGGTGAAACCGGAACCCTTGGATATATGGCTCCAGAGGTTCTGGATGGAAAGCCTTACAATAGAAGATGTGATGTCTACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTTAGCTTTGCCGATGTGTCATCTGCAGTTGTCCGTCAGAATTTACGACCCGAAATTCCCAGATGTTGCCCGAGTCCTTTAGCTAATATCATGAGGAAATGCTGGGATGGAAATCCAGACAAGCGTCCAGAAATGGATGAGGTAGTGAGAATGTTGGAAGCCATTGATACAAGCAAAGGAGGAGGAATGATACCAGAAGATGTGACTCCAAAATGTTTCTGTTTTACCCCCACCCGCGGTCCCTAA 1170 0.4376 MDSEVVVGGVKTPKMDLEAEGAVNSKMKESGDLGSKDRIFRADKIDLKSLDAQLEKHLSRVWSMDIESRRPKEEWEIDLAKLNLRYVVAHGAYGTVYRGTYDIQDVAVKVLDWGEDGVSTAAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSKNSSTDGENSLPSRACCVVVEYVPGGTLKQFLFKNRHKKLAYKVVVQLALDLSRGLSYLHSKKIVHRDVKTENMLINTNSELKIADFGVARVEALNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSPLANIMRKCWDGNPDKRPEMDEVVRMLEAIDTSKGGGMIPEDVTPKCFCFTPTRGP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0393 389 FunFam Serine/threonine-protein kinase HT1 186 371 - -
Glsi13g0393 389 CDD STKc_MAP3K-like 88 360 - -
Glsi13g0393 389 Pfam Protein tyrosine and serine/threonine kinase 84 360 IPR001245 GO:0004672|GO:0006468
Glsi13g0393 389 PRINTS Tyrosine kinase catalytic domain signature 331 353 IPR001245 GO:0004672|GO:0006468
Glsi13g0393 389 PRINTS Tyrosine kinase catalytic domain signature 221 239 IPR001245 GO:0004672|GO:0006468
Glsi13g0393 389 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672|GO:0006468
Glsi13g0393 389 PRINTS Tyrosine kinase catalytic domain signature 183 196 IPR001245 GO:0004672|GO:0006468
Glsi13g0393 389 FunFam Kinase suppressor of Ras 1 71 166 - -
Glsi13g0393 389 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0393 389 Gene3D Transferase(Phosphotransferase) domain 1 188 371 - -
Glsi13g0393 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Glsi13g0393 389 SUPERFAMILY Protein kinase-like (PK-like) 61 360 IPR011009 -
Glsi13g0393 389 Gene3D Phosphorylase Kinase; domain 1 71 164 - -
Glsi13g0393 389 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0393 389 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0393 Glsi-ChrGlsi13 22278034 22282357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0393 12 389 MAP Kinase Kinase Kinase AT3G22750 77.309 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi13g0393 PK_Tyr_Ser-Thr 1.6e-58 CL0016