Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0391 ATGGACACACCAGAGAGGAACCAGATCGGCACTCCCATCTCAAAATTTGAGGATTCACCTGTATTCAACTATATCAATAGTCTTTCACCTATAAAGCCAGTCAAGTCTGTGCACATTACTCAGACTTTCAACTCACTCAGCTTTTCATCCCCTCCATCTGTTTTCACATCGCCCCATGTAAGCTGTCACAAGGAATCTAGATTTCTGAGGAGGCATAACCTTTTGGACACGTCAAAGCCTAAGGTTTTGTCTGAAGATGGGAACAAAATCTGTTCAAGTGAAAAGGTTCTTACAGATTCAACTCATGCATCTCATAACTCAAGTGAGCTACAGGAAAACGCAGATCAGGGGATTCCCATGGGAGATTCTTCAGTTGAGCCATCTAGTGAACACACAAACTTTGCAATTGAGCTACCGCAAACCTTAAAATATGATTGTGGTAGCCCAGGCTGTGATCCTCCACCTTGTGGTGATGAAACAAATTCTCTTTTGGATTTGTCGAGTAAGGAAGCATCAGATGTTGTCTATGTTCATGAAGCCTGTGAAAAAAATTCAGCTGAGGGTGAAGTGCTTCTTCAGGGAATATGTCAAATTGAGCCAAGAAATGAAGGCCCAGAATGTGATTGGGAAAGTTTAATTTCTGATGCTGCTGATCTGTTAATCTTTAACTCCCCAAACGAAAGAGAAACTTTAAAAGGTCTAATGCAGAAACCATTTGATCCTACTGTACGACTTAGCAATTTTATGTCTCAGTTGCCTCAAACTACCATCAGCAATGGTAAAAACATTTACACCGTTGATCCAGTTGCTTCTGGTTCAGAACATGAAATTGGAGATTATCCTTCTAAACTAGGAGCTGCCACAGACACTGTTCAGGCACAGGACAATCTTGCCAACTCTGCTTTGACGGCTAGCAATTCAAATGAAACAATTGATAATGAGCTTGTCTCTATAACACACCATGGTATGCGGAGGCGCTGTCTAGACTTTGAGATGGTTGGAGCAAGAAGGAAGAATGCAGATGATGGTTCATATAACAGTTCCAGTACATCACAATCTGATGAGAGGAATGTTGCTAATGATAAGCAGATGCTTCCTAAAAAACGCAATGGTGATTCACAGAGGTGCATTTTGCCTGGAATTGGTTTGCACTTGAATGCTCTTGCGAACTTGAAAGGTTACAAAAGCATAATAAATGAAAATATGTCTTCTGGAAGACAAACTAGTCTACCCAGCCCCATTTCTGCCTTGCAACTCTCTACAAGCGAAGAACATCATCTGTCAATTGTGCCTGTGTCATCTGAAAGAGATTTGGATCCCCCAGACAATGGGGTTCAGCCTACTGAGGATTGTTCCCAGGCATCAGCTTATATGGTTGGTGAAGATTTCAATCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTTGGAGCCAGCCGGAGAAAGTGAGGCCTGTAAGCGTTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCGGCTGGTGTCTACTGCATTGAACCTTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCACGAGGATACTGTTCTTGCAACTCGCAAGCAGATTGAGTCTCGTAATCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTTCTGATCCTGTACCCGAAATTGGGGATGACCCCAACAAAACTCCAGCTTCAGCGCGGCATAAAAGAGGATGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGATGCAAGAATGCTTATGGTAGAAAGGATGGTTCTGCTCCTATAGGAATAGAAACGGAACCAGAAGAAGAAACAGAATCATGTGAGAAGGGTGTGGCTGAAAAGTCTCTACAAAAATCTGAAATTCAGAATAATGAAGACCATTCAGATTCTGCTCTTCCCACAACACCCTTACGCATTTGCAGACCATTGCTTCCGTTGTCCTTCTCATCAAAGGGGAAACCGCCAAGATCTTCTTTTATTACTACCATATCTTCTTCTGGATTGTATGCCGGCCAAAAACTCGGGAAACCCAGCATCCTTCGGTCTCAACCGAAGTTCGAAAAGCAATTCCAAACTGTTTCTGATGACGAAATGCCAGAGGTTCTCCGAGGTGACGGCTCTCCTAGCATCAAGACATCTTCTCCCAATGGCAAGAGGATCTCCTCTCCTAACTGTGATTTTGGATCATCTCCTAGTCGCAGGAGTGGGAGGAAGTTGATATTACAATCCATCCCTTCATTTCCTTCTCTCACCCCTCACCTTTAG 2331 0.4294 MDTPERNQIGTPISKFEDSPVFNYINSLSPIKPVKSVHITQTFNSLSFSSPPSVFTSPHVSCHKESRFLRRHNLLDTSKPKVLSEDGNKICSSEKVLTDSTHASHNSSELQENADQGIPMGDSSVEPSSEHTNFAIELPQTLKYDCGSPGCDPPPCGDETNSLLDLSSKEASDVVYVHEACEKNSAEGEVLLQGICQIEPRNEGPECDWESLISDAADLLIFNSPNERETLKGLMQKPFDPTVRLSNFMSQLPQTTISNGKNIYTVDPVASGSEHEIGDYPSKLGAATDTVQAQDNLANSALTASNSNETIDNELVSITHHGMRRRCLDFEMVGARRKNADDGSYNSSSTSQSDERNVANDKQMLPKKRNGDSQRCILPGIGLHLNALANLKGYKSIINENMSSGRQTSLPSPISALQLSTSEEHHLSIVPVSSERDLDPPDNGVQPTEDCSQASAYMVGEDFNQNSPKKKRRKLEPAGESEACKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDPVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAYGRKDGSAPIGIETEPEEETESCEKGVAEKSLQKSEIQNNEDHSDSALPTTPLRICRPLLPLSFSSKGKPPRSSFITTISSSGLYAGQKLGKPSILRSQPKFEKQFQTVSDDEMPEVLRGDGSPSIKTSSPNGKRISSPNCDFGSSPSRRSGRKLILQSIPSFPSLTPHL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0391 776 MobiDBLite consensus disorder prediction 614 656 - -
Glsi13g0391 776 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 775 IPR044522 GO:0003700
Glsi13g0391 776 MobiDBLite consensus disorder prediction 96 129 - -
Glsi13g0391 776 ProSiteProfiles CRC domain profile. 483 608 IPR005172 -
Glsi13g0391 776 MobiDBLite consensus disorder prediction 713 757 - -
Glsi13g0391 776 MobiDBLite consensus disorder prediction 729 757 - -
Glsi13g0391 776 MobiDBLite consensus disorder prediction 338 373 - -
Glsi13g0391 776 SMART CXC_2 482 523 IPR033467 -
Glsi13g0391 776 SMART CXC_2 568 609 IPR033467 -
Glsi13g0391 776 MobiDBLite consensus disorder prediction 341 359 - -
Glsi13g0391 776 MobiDBLite consensus disorder prediction 627 647 - -
Glsi13g0391 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 571 606 IPR005172 -
Glsi13g0391 776 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 485 520 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0391 Glsi-ChrGlsi13 22251615 22256666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0391 16 775 CPP Transcription Factor Family AT4G14770 45.161 1.55e-172 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Glsi13g0391 TCR 3.1e-11 No_clan