Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0390 ATGTCAGTATCCATGGCTTTTCATTATGATCATCTTCTTCCTCTACCATTCTGGATCACCCTCTCTCTCATTCTCTTCTTCAATTCCATTACTTCTTCCCACCAACAATCCCTTCTTACCGAATCCAATCCCAGACTCTCTAAAGCTTACACTGCTCTTCAAGCGTGGAAGCACACAGTCTCTTCAGACCCCAACAACTTCACCTCCAATTGGGTTGGCCCCAATGTCTGCAACTACACCGGAATTTACTGTGCACCACCCCCAGATGATCCTCTCACTATCACCGTCGCCGGAATAGACCTCAACCACGGCGACGTAGCTGGGTCCTTACCGGAAGAGATCGGCCTCTTGACTGACCTCGCCCTTCTCCACATCAACTCTAATCAGTTCTCTGGTTCCCTCCCTAACGGCATCCGCCTCCTTCGTCTTCTCTTCGAGCTCGACGTTAGTAACAACCAATTCTCCGGACCATTTCCCGAGGCTGTTCTTGATCTTCCTTCTTTGAAATTCTTAGATATCAGATACAATGGCTTCCAAGGCGATGTCCCTCCCGCACTTTTCGACCTCAAAATCGATGCAATTTTCATCAATAACAACGAATTCCACTTCTCCATACCGGAAAATCTCGGGAACTCTACGGCATCCGTGATTGTGTTAGCAAATAACAATATCTCCGGTTGTCTTCCTTCGAGCATATCCAAAATGAAGGATACTCTGAATGAAATTATTATCCTGAACGGTGGGCTATCGGGTTGTTTGCCGGATGAAATTGGGTCGTTGGTGAATGTGACGGTGTTTGATGTGAGCTTTAACGGACTGGTGGGAGCGTTGCCGGAGCCGATGGGTGGAATGAAGAGCTTGAAGGAGTTGAATGTGGCGTACAACAAATTTTCCGGCGCGATTCCGGGGAGTGTGTGCTCGTTGCCGGGGTTGGAGAACTTCACATACTCGTTCAATTACTTCTCGGGCGAACCTTTGGTGTGTCTGAAGTTGCCGGGGAGAGATGACCGGAAGAATTGTATTCCGGAGAGACCAGAGCAAAGGTCACCGGGTGAATGCCACAGCCATAGGGTTTCTTTTGTGTTCAATTGCGCTCACGGCCGTCAGCTTCAGCAGAGGAGACGGAGCCCCTGTTATCTGCAGACTTCAGCAATGGCGGTGGGCAAGAACAAGCGCATCTCCAAGGGAAAGAAGGGAGGAAAGAAGAAGGCTGCCGATCCCTTTGCTAAGAAGGATTGGTATGATATTAAAGCCCCTTCAGTATTCCAAGTGAAGAATGTCGGCAAAACTCTTGTGACCCGTACTCAAGGAACCAAGATCGCATCAGAAGGACTGAAGCACAGAGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGAGACGAGGACCACGCATACAGGAAGATTCGATTGAGAGCTGAGGATGTTCAAGGAAAGAATGTCCTGACTAATTTCTGGGGAATGGATTTCACAACTGACAAGTTGAGATCATTGGTGCGCAAATGGCAAACTTTAATTGAAGCTCATGTTGATGTGAAGACAACTGATAATTACACATTGAGGATGTTCTGCATTGGGTTTACTAAGAGGCGTGGGAACCAGGTTAAGAGGACCTGTTATGCACAGTCAAGCCAGATCAGACAGATCCGCCGGAAGATGAGGGAGATTATGACCAACCAGGCAACTTCCTGTGATTTGAAAGAGTTGGTCCGCAAGTTCATTCCTGAGATGATTGGAAAGGAGATTGAGAAGTCAACATCAAGCATCTATCCTTTACAGAATGTGTTCATTAGGAAGGTCAAGATCCTGAAAGCTCCAAAGTTTGATCTTGGAAAGTTAATGGAGGTCCATGGGGACTACTCCGAAGACGTAGGTGTGAAGGTAGACAGGCCTGCAGATGAAACAATGGCCGAGGTTACCACCGAGGTTGTTGGAGCCTAA 1938 0.4768 MSVSMAFHYDHLLPLPFWITLSLILFFNSITSSHQQSLLTESNPRLSKAYTALQAWKHTVSSDPNNFTSNWVGPNVCNYTGIYCAPPPDDPLTITVAGIDLNHGDVAGSLPEEIGLLTDLALLHINSNQFSGSLPNGIRLLRLLFELDVSNNQFSGPFPEAVLDLPSLKFLDIRYNGFQGDVPPALFDLKIDAIFINNNEFHFSIPENLGNSTASVIVLANNNISGCLPSSISKMKDTLNEIIILNGGLSGCLPDEIGSLVNVTVFDVSFNGLVGALPEPMGGMKSLKELNVAYNKFSGAIPGSVCSLPGLENFTYSFNYFSGEPLVCLKLPGRDDRKNCIPERPEQRSPGECHSHRVSFVFNCAHGRQLQQRRRSPCYLQTSAMAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRGNQVKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKSTSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADETMAEVTTEVVGA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0390 645 FunFam Leucine-rich repeat extensin-like protein 1 50 211 - -
Glsi13g0390 645 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 36 376 - -
Glsi13g0390 645 Pfam Leucine rich repeat N-terminal domain 50 84 IPR013210 -
Glsi13g0390 645 SUPERFAMILY L domain-like 49 331 - -
Glsi13g0390 645 Pfam Ribosomal S3Ae family 400 605 IPR001593 GO:0003735|GO:0005840|GO:0006412
Glsi13g0390 645 Hamap 40S ribosomal protein S1 [RPS3A]. 385 642 IPR027500 GO:0003735|GO:0005840|GO:0006412
Glsi13g0390 645 SMART Ribosomal_S3Ae_2 399 605 IPR001593 GO:0003735|GO:0005840|GO:0006412
Glsi13g0390 645 Gene3D Ribonuclease Inhibitor 47 212 IPR032675 -
Glsi13g0390 645 Gene3D Ribonuclease Inhibitor 213 332 IPR032675 -
Glsi13g0390 645 ProSitePatterns Ribosomal protein S3Ae signature. 445 457 IPR018281 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0390 Glsi-ChrGlsi13 22220011 22226995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0390 385 645 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.260 1.33e-157 452