Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0388 ATGGCGACTCCCTCAGCTTCATCAGAAGGTGGTCCTGGTGAGAAAATGTCTCTGAAAGATCAAGGTAATGAATTTTTCAAGTCAGGGAAGTATCTCAAAGCCGCTGCACTTTACACCCAAGCCATCAAGCAAGACCCTTCAAACCCCACTCTTTATAGTAACCGTGCTGCTGCATTGCTGCAACTGGATAAACTTAATAAAGCTCTTGATGATGCTGAGATGACAATAAAATTAAAACCTCAATGGGAAAAGGGGCATTTCAGGAAGGGATGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTGCCTTTCAGATCGCTTTGCAGTACAACCCACAAAGTCAAGAAGTATTGAAAAAGATAAGGAAGATAAACCAACTTGCAAGGGATAGAAATCGAGCTGAAGAAGTGGAGAATATGAGAGCTAATGTTGACATGGCCAAGCATTTAGATACATTGAAACCCGAATTGTCTGGGAAGTATGGATCCGAAGAATGCTGGAAAGACTTGTTCTCTTTCCTTGTTGAGACCATGGAGACAGCTGTAAAATCATGGCATGAAACTTCTTCGGTGGATGCAAGAGTCTACTTTCTTCTTGATAAGGAAAAGACACAGACTGATAAATATGCTCCAGTTGTAAATATTGATAAGGCCTTTGAATCACCGCATACACACAGCAACTGTTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTTTCCAGAGCTGCCTGCTTAGTGGCTCCCAAAAGCATAATTGCTTATCCACAGGTCTGGAAAGGCCAAGGATCAAGGAAGTGGAGACATGGGCAGAATGATGGCTTCTTTGTTCAATTTGAATCACCTTCCCTGCGAAAGCTGTGGTTTATTCCCAGTTCCAATGAAATGGGACAAACATTATGCAGGGACCCAGAAGTTTTGGACATTGGTACTCATGAAGTTCTTCCTCGCCTATACAGATAA 969 0.4221 MATPSASSEGGPGEKMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGHFRKGCILEAMKRYDDALAAFQIALQYNPQSQEVLKKIRKINQLARDRNRAEEVENMRANVDMAKHLDTLKPELSGKYGSEECWKDLFSFLVETMETAVKSWHETSSVDARVYFLLDKEKTQTDKYAPVVNIDKAFESPHTHSNCFSFLRQYAEESFSRAACLVAPKSIIAYPQVWKGQGSRKWRHGQNDGFFVQFESPSLRKLWFIPSSNEMGQTLCRDPEVLDIGTHEVLPRLYR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0388 322 FunFam serine/threonine-protein phosphatase 5 14 128 - -
Glsi13g0388 322 Pfam TPR repeat 22 62 - -
Glsi13g0388 322 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g0388 322 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Glsi13g0388 322 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Glsi13g0388 322 PANTHER TPR REPEAT CONTAINING PROTEIN 16 319 - -
Glsi13g0388 322 Coils Coil 55 75 - -
Glsi13g0388 322 SUPERFAMILY TPR-like 17 126 IPR011990 GO:0005515
Glsi13g0388 322 SMART tpr_5 49 82 IPR019734 GO:0005515
Glsi13g0388 322 SMART tpr_5 83 116 IPR019734 GO:0005515
Glsi13g0388 322 SMART tpr_5 15 48 IPR019734 GO:0005515
Glsi13g0388 322 Gene3D Tetratricopeptide repeat domain 14 128 IPR011990 GO:0005515
Glsi13g0388 322 Pfam Tetratricopeptide repeat 84 115 IPR013105 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0388 18 110 U-box Gene Family AT3G07370 30.108 2.13e-06 46.6