Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0363 ATGAGTCGAGTGAATGAAGAGTTTCCAGGTGAAGCAAGTTCTTGTTTTTCTCCCCGACCAATGGAGGGCCTTCATGAAACTGGTCCTCCTCCATTTCTCACCAAAACTTATGACATCGTCAATGACTCTTCCACGAATCATGTGGTTTCATGGAGCAGAGGGAACAATAGCTTCGTTGTGTGGGATCCACAGTCATTTTCCATGTCCCTTCTCCCCAGATACTTCAAGCACAACAATTTCTCTAGCTTTGTCAGGCAGCTTAACACCTACGGGTTTAAAAAGGTTGATCCGGATAGGTGGGAATTTGCAAATGAAGGGTTTCTTAAAGGGCAAAAGCATCTTCTAAAGAACATTAGGAGAAGGAAGGCACCACCTCAACAACCTCAGGCTCTTCAGCAAGCTCAGCTAGAACCTTGTGTTGAAGTAGGAATATTTGGATTAGGTGGAGAGCTAAATAGATTGAGGCGTGACAAGCGGGTTCTTATGGTGGAGCTTGTCAAACTGAGACAACAACAACAAAATACCAAAAGATACCTTCAAGAAATGGAAGGTAGGCTCAAGAGGACCGAGCAGAAGCAGCAGCAAATGATGAACTTCTTAGCAAAAGTAATGCAGAATCCCAGCTTCGTTCAACGGTTGGTTCAACAAAAGCAACGGAAAAAGGAGATGGTGGAAGCTTTTTCCAAGAAGAGAAGAAGACCTATTGATCAAGGGCCTGGTAATATTGATCAAGAGTGTTCAGCTTTTGTTAAACTTGAAAATCAGGAATACACTGACATATCAGAGTTTGAGATTTCATATTTTGACTTAGCTATGAATATGGAGGGATCACAAAGTGGGAGCCTGAAGAACACACAGGAGGAAGAACATATGGGAAAAGGAGTTGAACTAAATGTTGGAAGTAGAGATAAAGACATTGACGATGTGTTTTGGCAAGATTTGTTGAATGAGGATATTGGTGAAGAACATGATCTACAGGTACAAGGCTTTGAAGATGAAGATGTAGATGTGTTGGCTGAACAGCTTGGCTATTTGACCTCTACTCCTAAATAA 1053 0.4188 MSRVNEEFPGEASSCFSPRPMEGLHETGPPPFLTKTYDIVNDSSTNHVVSWSRGNNSFVVWDPQSFSMSLLPRYFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEGFLKGQKHLLKNIRRRKAPPQQPQALQQAQLEPCVEVGIFGLGGELNRLRRDKRVLMVELVKLRQQQQNTKRYLQEMEGRLKRTEQKQQQMMNFLAKVMQNPSFVQRLVQQKQRKKEMVEAFSKKRRRPIDQGPGNIDQECSAFVKLENQEYTDISEFEISYFDLAMNMEGSQSGSLKNTQEEEHMGKGVELNVGSRDKDIDDVFWQDLLNEDIGEEHDLQVQGFEDEDVDVLAEQLGYLTSTPK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0363 350 Gene3D - 24 122 IPR036388 -
Glsi13g0363 350 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 Coils Coil 151 192 - -
Glsi13g0363 350 MobiDBLite consensus disorder prediction 1 22 - -
Glsi13g0363 350 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Glsi13g0363 350 Coils Coil 210 230 - -
Glsi13g0363 350 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 253 IPR027725 -
Glsi13g0363 350 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0363 350 FunFam Heat shock transcription factor 1 25 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0363 Glsi-ChrGlsi13 21626937 21628936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0363 18 348 HSF AT3G22830 54.865 6.96e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi13g0363 HSF_DNA-bind 1.6e-32 CL0123