Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0362 ATGAGTCGAGTGAATGAGGAGTTTCCAGGTGGGGCAAGTTCTTGTTTTTCTCCCCGACCAATGGAGGGCCTTCATGAAACTGGTCCTCCTCCATTTCTCACCAAAACTTACGACATCGTCGATGACCCTTCAACGAATCATGTGGTTTCATGGAGCAGAGGGAACAATAGCTTTGTTGTGTGGGATCCACAGTCATTTTCCATGTCTCTTCTCCCCAGATACTTCAAGCACAACAATTTCTCTAGCTTCATCAGGCAGCTTAACACCTACGGTTTTAGAAAAGTTGATCCAGATAGGTGGGAATTTGCAAATGAAGTGTTTCTTAAAGGGCAAAAGCATCTTCTGAAGAACATTAGGAGAAGAAAGATATCACCTCAACAATCTCAGGTTCTTCAGCAAGCTCAGCTAGAACCTTGTGTTGAAGTGGGAAGATTTGGATTAGGTGGAGAGGTTAATAGATTGACGCGTGACAAGCAGGTTCTTATGGTGGAGCTTGTGAAACTTAGACAACAACAACAAAATACCAAAAGATACCTTCAAGAAATGGAAGGTAGGCTCAAGAGAACCGAGCAGAAGCAGCAGCAAATGATGAACTTCTTAGCAAAAGCAATGCAGAATCCCAGCTTCGTTCGACGGTTGGTTCAACAAAAGCAATGTAAAAAGGAGGTGGTGGAAGCTCTTTCCAAGAAGAGAAGAAGACCTATTGATCAAGGGCCTAGTAATATTGATCAAGAGCGTTCAGCTTTTGTTAAACTTGAACATCAGGAATACACTGACATATCAGAGTTTGAGATTTCAGATTTGGACTTGCTTATGAACATGGAGGGATCACAAAGCGAGAGCCCGAAGAACAGAGAGGAGGAACAACATATGGAAAAAGGAGTTGAACTAAATGTTGGAAGTAGAGATAAAGACATTGATGATGTTTTTTGGCATGATTTGTTGAATGAGGATATCGTTGAAGAAGATCTACAGGTACAAGGTTTTGAAGACGAAGATGTAGATGTGTTGGCTGAACAACTTGGCTATTTGGCCTCTGGTCCTAAATAA 1050 0.4181 MSRVNEEFPGGASSCFSPRPMEGLHETGPPPFLTKTYDIVDDPSTNHVVSWSRGNNSFVVWDPQSFSMSLLPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEVFLKGQKHLLKNIRRRKISPQQSQVLQQAQLEPCVEVGRFGLGGEVNRLTRDKQVLMVELVKLRQQQQNTKRYLQEMEGRLKRTEQKQQQMMNFLAKAMQNPSFVRRLVQQKQCKKEVVEALSKKRRRPIDQGPSNIDQERSAFVKLEHQEYTDISEFEISDLDLLMNMEGSQSESPKNREEEQHMEKGVELNVGSRDKDIDDVFWHDLLNEDIVEEDLQVQGFEDEDVDVLAEQLGYLASGPK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0362 349 MobiDBLite consensus disorder prediction 1 21 - -
Glsi13g0362 349 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0362 349 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0362 349 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0362 349 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0362 349 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi13g0362 349 MobiDBLite consensus disorder prediction 280 295 - -
Glsi13g0362 349 Coils Coil 151 192 - -
Glsi13g0362 349 Gene3D - 24 122 IPR036388 -
Glsi13g0362 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 266 IPR027725 -
Glsi13g0362 349 MobiDBLite consensus disorder prediction 276 295 - -
Glsi13g0362 349 FunFam Heat shock transcription factor 1 25 122 - -
Glsi13g0362 349 SUPERFAMILY "Winged helix" DNA-binding domain 28 121 IPR036390 -
Glsi13g0362 349 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0362 Glsi-ChrGlsi13 21569516 21571509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0362 18 346 HSF AT3G22830 56.667 8.71e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi13g0362 HSF_DNA-bind 1.8e-32 CL0123