Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0356 ATGAAGCTTCTTCCGTCCGAGGAAACGGCCTCCGAAGCCCGCGACTCTCCTGAGGAGACCGACAAAAAGAAGCCCCCGAGCCCTTCTTTGGTTGAAGGCAATGACCGTGACATTGATAATTCCGATGATGCGGTTCTCGACGTCTCTGGGAAAACTCTGGAGTTCCCGGTATTGGAGAATGCAGAAGATTCCATGGAGGGCTTATATCTTTATAAGAATGTTTACAGTTTAATCCCCAAGTCTCTGGGGGGTCTTGGACGGTTGAAGACATTGAAGTTCTTTGGGAATGAGATTAATTTGTTTGCTCCAGAGTTTGGAAACTTGACGGGGTTGGAGTGCTTGCAGATGAAGATATCACCGCCGGGGATTGGTGGGTTGCAATTGCATAAGTTGAAGGGTTTGAAGGAGCTTGAGCTGGCGAAAGTGCCTCCCCGACCTTCTGCTTTCCCTATATTGAGCGAGATTGCTGGTCTCAATTGCTTGACCAAGCTATCTATTTGCCACTTCTCTATTAGATACCTTCCTCCAGAAATTGGCTGCTTAAAGAGACTGGAGTATCTAGATCTTTCATTCAATAAGATGAAGACATTGCCCTCTGAAATCAGTTATTTGAATGACTTGATATCTTTGAAAGTTTCGAATAATAAGTTGGTCGAACTACCATCAACAATGGCCTCTTTGTCAAGGCTGGAGAACTTGGACCTTTCAAATAATAGGTTGACTTCATTGGGATCTCTTGAGCTTGGCTCTATGCATAAACTCCAGAACCTAAATCTTCAGTACAATAAGCTGCTCAACATTTTCCAAATACCTTCATGGATTTGCTGTAATATGGAAGGAAATGACAAAGGTGCATGCAGTGATGATTTTAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAACCAGTTTACAGGAGAATGATGTAATTCATTCTTATGGATCTCATAATACCTCGTCCAGCCTGTTAGCTAGCTCCTCATCTAACGGCAGATGTTTTGCAGCCCGGAAATCAGGTAAACGATGGAAGCGAAGACATTATTTACAGCAGAAAGCCCGTCAAGAACGCTTAAACAACAGCAGGAAGTGGAAAGGTTTAGATAATGCTCAAATGCTAAGCAAGAAGATGGATAGAATTTGTGAACCAGGAAACCTAGACAGTCTTGCTTCTGAAAGTTGCAGAGAAACTGTATCGGACTATGTGAATGTGGATGATGATGCTAAAAAATTATTCGCAGAAGCAGAAAATGACAATGTAGTTGACAATGTTAACAATAATGAAGTGGGTGTTCAAAAGCAATTTTCCAAAGAAGATTGCTGCTCTAGTGGAAGTAAAGATGAAAAAGATGCTTCCTTGTACCCTGTAGAGAATGGCCCTAGTGAGCAGGATGAAGCATCAACCTCAGAAATTTCGAAGTGTACTTCTAAATCAAAGAGGCATTCAGATCGGGACCTTGATAATCCTAAACCATGCAAGTCTAGAAAACCGATTGGTGATAGCTCATTGCTGTCCTACAAGTATAGTAACTTATCATTTTGTGGCATTGATGACCATCTGCCAGATGGGTTTTATGATGCAGGGCGTGATCGACCTTTTATGCCACTTGAGTGTTATGAGCAAAATCAATGTCTTGCCTCTCGTGAAGTCATCTTGGTGGACAGAGAAAGGGATGAAGAATTGGATGCTATCACACTTTCTGCTCAGGCATTGGTGTCTCATTTGAAGCAGTTAAATGATTTTACCAGACATAGGAATCATGCTACCATTGATAACTTGCAGATTGCGTCACTGCTTGCACTATTTGTATCGGATCATTTTGGTGGCAGTGATAGAAGTGCTATTGTGGAAAGGACACGAAAATCAGTGTCTGGTTCAAACTACCGTAAGCCTTTTGTCTGTACATGCTCAACTGGAAGCAGCAGTGACATTAGTGCTTCCACCAAACCAGTTGTCAACACTGTGGAAGATATCACTCTTTCGAACATATGTGAAAAATCTCTTGATTCCATAAAAAAAGGACGAAGGTCAATCATAGTTCCTATTGGAACTGTGCAGTTTGGTGTGTGTAGACATAGAGCTCTGCTTTTGAAGTATTTATGTGATCACATGGAGCCACCGGTGCCTTGTGAGCTTGTCAGGGGTTTCCTGGATTTTTCACCACATGCCTGGAACACCATCCTTATTAAGAGAGGTGATGCAATGGTTCGAATGCTAGTTGATGCATGCCGGCCTCATGATATTAGAGAAGAAGACGACCCTGAATTTTATTGCAGGTATATACCTCTTAGTCGAACCAAAGTCCCTCTTTCAACTGATGAAAATCCTGGTCCAGGTTGTTCCTTTCCATCTCTCTCTACTTGTGATGAATTTGAGAAGGCGGTTTTGAGTACTTTAGTGCGATGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTTCGTACTTTGGAAGTGCAGGAGAGTTCAGCAGACAAAATTAAAAACTTCGAATATAATTGTTTGGGCGAAGTGAGACTACTAGGTGCCTTGAAACACCCATGTATAGTTGAAATGTATGGACACCAAATATCCTACCAGTGGACTCTCTCAGCAGATGGTAATCCTGAGGGTCGTGTATTAAGGTCTGCAATTTTCATGGAGTACATGGAAGGGGGCTCTTTAAGAAACTATCTAGATAAGCTATCAAAAGCTGGTGAAAAGCATGTTCCAGTAGAGTTGGCTTTGTATATTGCCAAAGATGTAGCATGTGCTTTGTCAGAGGTTCATTCGAAGCACATAATTCATCGTGATATAAAAAGTGAAAACATTCTGATTGATTTGGATAGAAAGAAAGATGATGGAACCCCCACTGTGAAGCTTTGTGATTTTGATAGTGCAGTACCACTGAGATCACCTTTGCACTCATGCTGTATTGCTCACGTGGGAGCACCTCCTCCTTATGTATGCATTGGAACACCTCGTTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAAGAAAATACTTATGGATTGGAAACTGATATTTGGTCCTTTGGATGTCTACTTCTGGAGCTACTGACTCTGCAAGTTCCATATTCTGGTATACCTGATTTACACTTCCATGACATTCTGCAGATGGGTAAACGACCACAATTAACTGAGGAGCTGGAAGAACTGTGTTCAATGAACGAACCCACAATGATTCGATCCGTTGAAGAGTCAGGAAAGTCCAATACTGAGGTAGACACGGTGAGATTCCTTGTTGATTTGTTTCTTAGGTGTGTAGAAGAAAATCCAGCCAAACGTCCTACAGCTGAAGAAATCTATAAAATGCTGCTTGCACACACAATCAGCTTAAAAATTCAAGATGATGATAGAAAGAGTTAG 3366 0.4183 MKLLPSEETASEARDSPEETDKKKPPSPSLVEGNDRDIDNSDDAVLDVSGKTLEFPVLENAEDSMEGLYLYKNVYSLIPKSLGGLGRLKTLKFFGNEINLFAPEFGNLTGLECLQMKISPPGIGGLQLHKLKGLKELELAKVPPRPSAFPILSEIAGLNCLTKLSICHFSIRYLPPEIGCLKRLEYLDLSFNKMKTLPSEISYLNDLISLKVSNNKLVELPSTMASLSRLENLDLSNNRLTSLGSLELGSMHKLQNLNLQYNKLLNIFQIPSWICCNMEGNDKGACSDDFSSSSVEMDVYETSLQENDVIHSYGSHNTSSSLLASSSSNGRCFAARKSGKRWKRRHYLQQKARQERLNNSRKWKGLDNAQMLSKKMDRICEPGNLDSLASESCRETVSDYVNVDDDAKKLFAEAENDNVVDNVNNNEVGVQKQFSKEDCCSSGSKDEKDASLYPVENGPSEQDEASTSEISKCTSKSKRHSDRDLDNPKPCKSRKPIGDSSLLSYKYSNLSFCGIDDHLPDGFYDAGRDRPFMPLECYEQNQCLASREVILVDRERDEELDAITLSAQALVSHLKQLNDFTRHRNHATIDNLQIASLLALFVSDHFGGSDRSAIVERTRKSVSGSNYRKPFVCTCSTGSSSDISASTKPVVNTVEDITLSNICEKSLDSIKKGRRSIIVPIGTVQFGVCRHRALLLKYLCDHMEPPVPCELVRGFLDFSPHAWNTILIKRGDAMVRMLVDACRPHDIREEDDPEFYCRYIPLSRTKVPLSTDENPGPGCSFPSLSTCDEFEKAVLSTLVRCKFGSVEAAAKVRTLEVQESSADKIKNFEYNCLGEVRLLGALKHPCIVEMYGHQISYQWTLSADGNPEGRVLRSAIFMEYMEGGSLRNYLDKLSKAGEKHVPVELALYIAKDVACALSEVHSKHIIHRDIKSENILIDLDRKKDDGTPTVKLCDFDSAVPLRSPLHSCCIAHVGAPPPYVCIGTPRWMAPEVMRTMYKENTYGLETDIWSFGCLLLELLTLQVPYSGIPDLHFHDILQMGKRPQLTEELEELCSMNEPTMIRSVEESGKSNTEVDTVRFLVDLFLRCVEENPAKRPTAEEIYKMLLAHTISLKIQDDDRKS 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0356 1121 SMART LRR_sd22_2 227 248 - -
Glsi13g0356 1121 SMART LRR_sd22_2 181 206 - -
Glsi13g0356 1121 ProSiteProfiles Leucine-rich repeat profile. 183 204 IPR001611 GO:0005515
Glsi13g0356 1121 ProSiteProfiles Protein kinase domain profile. 792 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0356 1121 Gene3D Transferase(Phosphotransferase) domain 1 786 1120 - -
Glsi13g0356 1121 Pfam Ethylene-responsive protein kinase Le-CTR1 658 740 - -
Glsi13g0356 1121 SUPERFAMILY Protein kinase-like (PK-like) 803 1106 IPR011009 -
Glsi13g0356 1121 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 111 1110 - -
Glsi13g0356 1121 PRINTS Leucine-rich repeat signature 184 197 - -
Glsi13g0356 1121 PRINTS Leucine-rich repeat signature 227 240 - -
Glsi13g0356 1121 Pfam Leucine rich repeat 209 264 IPR001611 GO:0005515
Glsi13g0356 1121 SUPERFAMILY RNI-like 65 274 - -
Glsi13g0356 1121 FunFam Leucine-rich repeat protein kinase family protein 830 1111 - -
Glsi13g0356 1121 Gene3D Ribonuclease Inhibitor 44 301 IPR032675 -
Glsi13g0356 1121 MobiDBLite consensus disorder prediction 1 42 - -
Glsi13g0356 1121 MobiDBLite consensus disorder prediction 473 493 - -
Glsi13g0356 1121 ProSiteProfiles Leucine-rich repeat profile. 229 250 IPR001611 GO:0005515
Glsi13g0356 1121 MobiDBLite consensus disorder prediction 437 493 - -
Glsi13g0356 1121 SMART LRR_bac_2 204 223 - -
Glsi13g0356 1121 SMART LRR_bac_2 181 200 - -
Glsi13g0356 1121 SMART LRR_bac_2 227 246 - -
Glsi13g0356 1121 SMART LRR_typ_2 181 204 IPR003591 -
Glsi13g0356 1121 SMART LRR_typ_2 85 107 IPR003591 -
Glsi13g0356 1121 SMART LRR_typ_2 227 250 IPR003591 -
Glsi13g0356 1121 SMART LRR_typ_2 251 277 IPR003591 -
Glsi13g0356 1121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Glsi13g0356 1121 FunFam Leucine-rich repeat protein kinase family protein 54 297 - -
Glsi13g0356 1121 SMART serkin_6 792 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0356 1121 Pfam Protein kinase domain 819 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0356 Glsi-ChrGlsi13 21465145 21476533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0356 784 1107 MAP Kinase Kinase Kinase AT2G24360 28.308 1.52e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Glsi13g0356 Pkinase 2.3e-38 CL0016