Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0354 ATGCCGGTGAGACAGATGAAAGAAAGCTCGGAGCAGCATCTTGTGATCAAAACCCATTTGCAAAACTCTATGAATCCAGCGAAGAAGGAACCCAAAACAGTCCAAAATGGCAAAGGTCCACCGCAACAAGAATCCCACAACGCCAAACCCCATAGCCAGACTTCACCTCAGACGAAGAGCAGGGGAAGAAGAAGGAGCAGAGGGGGCCGAAAGTCCGATCAAGGAGATGTTTTGATGCGACCCAGTTGCCGACCTTGCACTGTGGCTAATAAACCACTATCACCCAACCCAGGCCAGATTCTGGTAGCTAATACTGCAAATGGGTCTGTTGAAAATGGCGGCAACTCTTGTGATGTAGTGATGGGTTTTCCTACTTCAAGCAAATCTTTGAGCTTTGCTCCCAGGCCTGGGTATGGACAGGTTGGGACAAAATGCATTGTGAAGGCTAACCATTTCTTTGCAGAGTTACCGGACAAAGACTTGAACCAGTATGATGTCACTATTACCCCTGAAGTGTCGTCTAGAACAGTGAACAGGGCCATCATGGCAGAACTTGTGAGACTGTATAAAGAGTCTGATTTGGGGATGAGACTTCCTGCATATGATGGCAGAAAAGGTCTGTACACAGCAGGGGAGCTTCCCTTTGCCTGGAGAGAGTTTAAAATTAAGCTCGTAGATGAAGAGGATGGAGTTAATGGTCCCAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCTCGGGCAAACTTGTATCACTTAGGCCAGTTTCTAGCTGGTAAGCGTGCTGATGCTCCACAGGAGGCACTTCAGATTCTTGACATTGTACTTAGAGAGCTATCAACTAAGAGGTTTTGCCCCATTGGGAGATCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTCGGAGAGGGATTGGAGTCATGGTATGGATTTTACCAGAGCATTAGACCCACTCAAATGGGCCTTTCCCTCAATATTGATATGGCTTCTGCTGCTTTTATTGAACCTCTTCCAGTAGTGGAATTCGTTGGCCAGTTATTAGGAAAAGATGTGTTGTCAAGGCCATTGTCTGACGCTGATCGTGTAAAGATTAAGAAAGCTCTTAGAGGAGTGAAAGTTGAGGTAACACACAGAGGGAGTGTTCGAAGAAAATATCGTGTTTCAGGATTGACATCACAACCAACAAGAGAACTTGTGTTTCCTGTTGATGACAACTCAACTATGAAGTCAGTAGTTGAGTACTTCCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCAAACTATTTGCCTATGGAGGCCTGCAAAATTGTTGAGGGGCAACGTTATACAAAAAGGCTAAATGAGAAACAAATTACTGCTCTGCTGAAAGTTACTTGCCAGAGACCCCGTGATCGGGAAAATGACATTTTGCAGACCATTCAACATAATGCTTATGATCAGGATCCTTATGCAAAGGAGTTTGGGATTAAAATCAGTGAAAAACTAGCTTCTGTTGAAGCTCGAATTCTTCCTGCCCCTTGGCTTAAGTATCATGAAACTGGGAAAGAAAAGAACTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGGATGACTGTTAGCCGGTGGGCATGCATTAATTTCTCACGTAATGTGCAAGATAGTGTTGCTCGCAGCTTTTGTGGTGAACTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCAATATACAATGCCAAGCCAGAGCAGGTTGAGAAAGCTTTGAAGCATGTTTATCATGTGTCGATGAACAAAACTAAAGGAAAGGAATTGGAGCTTCTATTAGCAATTCTGCCTGACAACAATGGGTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCGCAATGCTGCCTGACGAAGCATGTCTTTAAGATCACTAAACAGTATTTGGCGAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTTGATGCTATAAGCTGCCGAATACCATTGGTTAGTGACATTCCAACCATAATATTTGGAGCAGATGTTACCCATCCAGAAAATGGAGAAGATTCCAGTCCCTCAATAGCAGCTGTTGTAGCTTCCCAAGACTGGCCTGAGGTGACAAAATATGCTGGTTTAGTGTGTGCTCAAGCTCACAGACAGGAACTTATTCAAGATTTGTACAAAACTTGGCATGACCCTGTCCGTGGCACAGTTAGTGGTGGCATGATCCGGGACTTGTTGGTCTCCTTTAGAAAGGCAACAGGACAGAAGCCACTAAGGATTATATTTTACAGGGATGGTGTAAGCGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGCTGGATGCAATCCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAGCCTCCAGTAACTTTTATTGTTGTACAAAAAAGACATCATACTCGGTTGTTTGCTAACAACCATAGGGACAAGAGCAGCACAGATAAGAGTGGGAATATATTGCCCGGGACTGTAATTGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGGACAAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAGAACAATTTTACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCTAGATGCACACGCTCTGTATCTGTGGTTCCTCCAGCATACTATGCACATCTAGCAGCTTTTCGGGCCCGTTTCTATATGGAACCAGAAATGCAGGAGAATGGCTCTAACGGGGGTGGCAGTGCTGGTCATGGTTCCAAAGCAACGCGAGCAGCCGGAGAGTGTGGTGTCCGGCCATTGCCAGCCTTGAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2988 0.4374 MPVRQMKESSEQHLVIKTHLQNSMNPAKKEPKTVQNGKGPPQQESHNAKPHSQTSPQTKSRGRRRSRGGRKSDQGDVLMRPSCRPCTVANKPLSPNPGQILVANTANGSVENGGNSCDVVMGFPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRAIMAELVRLYKESDLGMRLPAYDGRKGLYTAGELPFAWREFKIKLVDEEDGVNGPKREREYKVVIKFVARANLYHLGQFLAGKRADAPQEALQILDIVLRELSTKRFCPIGRSFFSPDIRTPQRLGEGLESWYGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRVKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHETGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRNVQDSVARSFCGELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKSSTDKSGNILPGTVIDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSNGGGSAGHGSKATRAAGECGVRPLPALKENVKRVMFYC 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0354 995 Pfam Mid domain of argonaute 537 614 IPR032473 -
Glsi13g0354 995 SMART DUF1785_2 287 339 IPR014811 -
Glsi13g0354 995 ProSiteProfiles PAZ domain profile. 340 454 IPR003100 GO:0005515
Glsi13g0354 995 SMART Piwi_a_2 628 949 IPR003165 GO:0003676
Glsi13g0354 995 MobiDBLite consensus disorder prediction 15 57 - -
Glsi13g0354 995 Pfam PAZ domain 366 470 IPR003100 GO:0005515
Glsi13g0354 995 CDD PAZ_argonaute_like 339 453 - -
Glsi13g0354 995 Gene3D - 518 691 - -
Glsi13g0354 995 CDD Piwi_ago-like 498 948 IPR045246 -
Glsi13g0354 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 124 950 - -
Glsi13g0354 995 MobiDBLite consensus disorder prediction 1 95 - -
Glsi13g0354 995 FunFam Protein argonaute-2 333 459 - -
Glsi13g0354 995 ProSiteProfiles Piwi domain profile. 628 949 IPR003165 GO:0003676
Glsi13g0354 995 Gene3D - 697 995 IPR036397 GO:0003676
Glsi13g0354 995 FunFam Argonaute 10 518 691 - -
Glsi13g0354 995 Pfam Argonaute linker 1 domain 288 337 IPR014811 -
Glsi13g0354 995 FunFam protein argonaute 10-like 697 995 - -
Glsi13g0354 995 Pfam N-terminal domain of argonaute 144 278 IPR032474 -
Glsi13g0354 995 Pfam Piwi domain 629 948 IPR003165 GO:0003676
Glsi13g0354 995 Pfam Argonaute linker 2 domain 480 526 IPR032472 -
Glsi13g0354 995 SUPERFAMILY Ribonuclease H-like 618 949 IPR012337 -
Glsi13g0354 995 SUPERFAMILY PAZ domain 334 494 IPR036085 GO:0005515
Glsi13g0354 995 Gene3D paz domain 333 458 - -
Glsi13g0354 995 SMART PAZ_2_a_3 344 476 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0354 Glsi-ChrGlsi13 21425184 21434275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0354 1 995 Eukaryotic Initiation Factors Gene Family AT5G43810 81.046 0.0 1675