Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0333 ATGGCTTCTTCATCATCGTCATTTATAGAAGCACTTATCTTTTCCATGAGCTTGTTCTGCTTAATATGCCCTACTTTTGGCTTGGTTAAAGAACAAGTTATAGACTCTCCTTTGTTAACAGAAAAAGAAAAGGTACACATTCCAAAGAGCAAGCCCTATATATTCATGAGAGGAAATGGGAGAGGAAGAACTACTATAGTTTGGTCTCAGAGTTCTGAAGATAACGTGGGTTCTGCTACCTTCAAGGTTGAAGCCCATAACTTCATTGCCTTTGGAATCAGCTTCAAGAATGAAGCACCCACAGGTATTGCCTATACCTCGCAAAACCAATCGGTGGCTGCCTTCGTAGCAGCAGACAAGGCGGCTTTCTATCATTGTGCATTTTATAGCACTCATAACACCCGCTTTGATTACAAAGGAAGGCATTACTATGAATCCTGCTATGTTCAGGACACAGATATTTGTGATAGATGA 474 0.4072 MASSSSSFIEALIFSMSLFCLICPTFGLVKEQVIDSPLLTEKEKVHIPKSKPYIFMRGNGRGRTTIVWSQSSEDNVGSATFKVEAHNFIAFGISFKNEAPTGIAYTSQNQSVAAFVAADKAAFYHCAFYSTHNTRFDYKGRHYYESCYVQDTDICDR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0333 157 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 150 - -
Glsi13g0333 157 Pfam Pectinesterase 42 152 IPR000070 GO:0030599|GO:0042545
Glsi13g0333 157 SUPERFAMILY Pectin lyase-like 42 152 IPR011050 -
Glsi13g0333 157 Gene3D - 40 155 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0333 Glsi-ChrGlsi13 20470063 20472153 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0333 43 150 Carbohydrate Esterase AT1G05310 39.640 6.05e-20 83.2