Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0330 ATGTGGCTGCTACCTTCAAGGTCGAAGCCCATAACTTCATTGCCTTTGGAATCAGCTTCAAGAATGAGGCACCCACAGGGATTGCTTAATTATACCTCACAGAATCAATCGGTGGCTGCCTTTGTAGCAGAAGACAAGGTGGCTTTCTATCATTGTGCATTTTATAGCACTCACAACAACCTCTTTGATTACAAAGGCAGGCATTACTATGATTCTTGCTACATTCAAGGTTCTATTGATTTCATCTTTGGGCGTGGGAGATCTTTCTTCCATGTACGTAATTAA 285 0.4175 MWLLPSRSKPITSLPLESASRMRHPQGLLNYTSQNQSVAAFVAEDKVAFYHCAFYSTHNNLFDYKGRHYYDSCYIQGSIDFIFGRGRSFFHVRN 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0330 94 ProSitePatterns Pectinesterase signature 2. 75 84 IPR033131 -
Glsi13g0330 94 Gene3D - 17 92 IPR012334 -
Glsi13g0330 94 Pfam Pectinesterase 33 90 IPR000070 GO:0030599|GO:0042545
Glsi13g0330 94 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 91 - -
Glsi13g0330 94 SUPERFAMILY Pectin lyase-like 33 91 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0330 Glsi-ChrGlsi13 20295531 20296142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0330 33 90 Carbohydrate Esterase AT5G07420 46.552 1.98e-15 67.8