Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0316 ATGGTAGGATTGGAACTCATACCCGTAGGTACAATTTTGGCTGTGCTGACCAACCAGGTTTTGAAAACAGCTCATGCAGCAGCCGATGTTCTTGTTGAAAAAGAAATTTTTAAGGTCCTTTCAAAACACCTGTTGGATATTGAACCAGTCCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGGATTGCCCTGGAGTCTCTTGAAGAAGATGTTAAGAGAGCAAATAAAGTGGTTGAGAAGTACAGGAACCGTGGTCGTTTTTACTTACTGGTTAAGTGCCGACACATAGTCAATGAAGTTGAAGAAGTTACAAGAAATATTGGAAGGTCCTTAGCTGTACTGTCGGTTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTTGATAGATTACAGAACGAGATGCAAAGGGTAGAGTTTGAGGCATCACAATCTCAGCTTCAGATTGTTGACAAATTAAACCAGGGCCTCAGGGAACAAAAACTAGATCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGTGTGCCAGTGGAGCCCTCGGAGATAAGCAAAGAGTTGGCTAGCATTAGGAGGGAAAAAGAAGAAGCTGCCAACAGAAAAGAAAGAGCTGAAGTGTTTTTTCTAGACCAGGTCATTGAGTTACTATCCCAAGCTGATGCTGCAAGGGATTATGAAGAAGTCAAGAAGCAATACTTTGAAAGGGTTCAAGTGATAGAGCGATATGATTCAAGGGAAAAATATATACAACCACTTAATTCTTTCCTTTGTTGTATAACTGGAACTGTTATGGTAGATCCAGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTGACAATGGCAAGAGTACTGACCCTGAAACAAAGGAGGTTCTCAAAGATACTGCCTTGAGATCTAACGTTCCACTAAGACAATCCATACAAGAGTGGAGAGAACTTAATTACTGTCTTACAATCAGGTCCATCAGGGAAAACCTATTATCAAATTCTGACTTATCTGTGCAAGAATCCCTGAGCCAAATGCAGGATCTGGTAAGAGAGAATTCTATTAACAAGGATTGGGTTTCCATAGGAGAGCTTACTGACATCATTATCTCTATCCTTGGGGACTCTGATAACAAAGTGAAGATAAAGATTTTGACTACTTTGAAGGATGTAGTAGCGGGCCATACAAGAAACAAGGAAAAAGTAGCTGAATCTCAAGGATGGGATCACATTATTGGCTGTTTAGGAAGTGACTCTAGCATCTCAAAAGCAGCGATTTATTTGCTGTATGAGTTACTGCAAGATCGATCCGGTTGGAATGTGTCTTTCTGTAGAAAACTCTCTCAGCATCACAGTGCAGTTTTTTTCCTTGTTACACTTCTAAAGTGTCCAGTCAATGAGTCAGCTGAGATTGCAGAAAATATTTTGATGGAGCTTTTTGACATAGACGAGGACAACATTTCTAGCGCTGCTAAGTTTGGCTGTTATAAACCACTTGTTGATCGTATGGTGCAAGGACCAGAGTCTTCAAGAATATCAATGGCAAAAACCATTGTTAATATGGAGCTGAATGATTTAAATTTAAAACTCCTTGGTGAGGAAGGAGCTATACCTCCTTTGCTTGAAATGCTCTCTGGCAGTATTAAATCAAAAGAATTGTCGTTATCGGCACTGGTTAAATTATCAGGATCTCATACCAATAAGGGGAAAATTGCTGCATCTGGAGGTGTTCCTCTTATTCTAGAATTACTGTTCTCTCCTCGGATTCAGACATTCATTACCATTAAATGCTCTGAAATTCTTGAGAAGCTTTCTTCTAATGCTGATGGAATTGATTTCTTCATTGATGGAGAAGGGAAACAACTCGAGTTAGATTCCATCATCACCAATTTGCTAGCTCTTCAACAGAATCCCAGTTCAGCCCACAATGTCCGTAAGCCTGCATTGCGTGCACTTCTTGGGATTTGCAAGTTTGAGACAGGTTTAGTTAAGAAGGCAGTTCTCGCTGCCAATGGAGTATCACTAATTCTTCCCCTTCTTGATGACTCTGATTCAGAAATCAGGGAAACTGCCATAAATCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATATCTCTTCAGGCCAAGAAGACTGGAGGCTTTGGTTGGGTTTCTTGAGAACGATGATAATGATGTACAAATGGCTGCTGCTGGATTATTAGCAAACCTACCAAAATCAGAAAGAGAACTCACCATGAAGTTGATTGAGTTGGGTGGACTTGATGCAATCATATGTATTTTGAAAACAGGAACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAATATTGAGTCACAGCGTGATTTGGTTAAACGTGGAATATATCCTTTGCTGGTAAATTTTCTCGATACTGGTTCAGCAACAGCAAAGGCTAGAGCAGCAGCATTCATTGGTGATCTTTCTGTGAGCACTCCAAAACTCACGGTTGTTTCCAAATCAAATGGTTGCTGGTGTTTTAGATCATCACGAGTTCCTCTGTGCTCAGCACATGGAAGTGTATGCAGTGTGACTACCACATTTTGTCTTCTGGAAGCACAAGCTTTGCCTGGCTTGGTAAAGCTCTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCAATTCAGACACTTTCCACATTGGTTTTAGAAGACTATCCTCAAAGGGGAGCCCGTGTCTTGCATGAATCTGATGCAATAAAACCCCTATTGGAGATTTTGACTTGGGGGACTGATTCTCTGAAGGCCGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAGGGAAATGGTGGAATACCATGGAACAACAGCTAGATTGCGTCTAGTTGGTCTGACTGGCATGAATATATATGGGGATGGCCACCTCAGGAGAAAGGCTGCCAGGGTATTGTCATTGCTTGAACGCTATTCGAAGTCATCATCATCTGCTATCTCAGGAGTTCTGGAGTAA 3045 0.4135 MVGLELIPVGTILAVLTNQVLKTAHAAADVLVEKEIFKVLSKHLLDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLVKCRHIVNEVEEVTRNIGRSLAVLSVANTEVLSRISDQVDRLQNEMQRVEFEASQSQLQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRREKEEAANRKERAEVFFLDQVIELLSQADAARDYEEVKKQYFERVQVIERYDSREKYIQPLNSFLCCITGTVMVDPVSLCTGTTCERSAIEAWFDNGKSTDPETKEVLKDTALRSNVPLRQSIQEWRELNYCLTIRSIRENLLSNSDLSVQESLSQMQDLVRENSINKDWVSIGELTDIIISILGDSDNKVKIKILTTLKDVVAGHTRNKEKVAESQGWDHIIGCLGSDSSISKAAIYLLYELLQDRSGWNVSFCRKLSQHHSAVFFLVTLLKCPVNESAEIAENILMELFDIDEDNISSAAKFGCYKPLVDRMVQGPESSRISMAKTIVNMELNDLNLKLLGEEGAIPPLLEMLSGSIKSKELSLSALVKLSGSHTNKGKIAASGGVPLILELLFSPRIQTFITIKCSEILEKLSSNADGIDFFIDGEGKQLELDSIITNLLALQQNPSSAHNVRKPALRALLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDDNDVQMAAAGLLANLPKSERELTMKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLDTGSATAKARAAAFIGDLSVSTPKLTVVSKSNGCWCFRSSRVPLCSAHGSVCSVTTTFCLLEAQALPGLVKLLHGEVHATAYEAIQTLSTLVLEDYPQRGARVLHESDAIKPLLEILTWGTDSLKAEALGLLEKVFVSREMVEYHGTTARLRLVGLTGMNIYGDGHLRRKAARVLSLLERYSKSSSSAISGVLE 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0316 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1006 - -
Glsi13g0316 1014 Gene3D - 335 557 IPR011989 -
Glsi13g0316 1014 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Glsi13g0316 1014 Gene3D - 558 854 IPR011989 -
Glsi13g0316 1014 SMART arm_5 576 614 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 672 712 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 800 840 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 757 797 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 714 755 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 873 913 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 917 957 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 407 446 IPR000225 GO:0005515
Glsi13g0316 1014 SMART arm_5 536 575 IPR000225 GO:0005515
Glsi13g0316 1014 SUPERFAMILY ARM repeat 508 954 IPR016024 -
Glsi13g0316 1014 SUPERFAMILY ARM repeat 195 616 IPR016024 -
Glsi13g0316 1014 Gene3D - 865 1000 IPR011989 -
Glsi13g0316 1014 Coils Coil 127 154 - -
Glsi13g0316 1014 CDD MLKL_NTD 34 145 - -
Glsi13g0316 1014 Coils Coil 62 89 - -
Glsi13g0316 1014 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 753 IPR000225 GO:0005515
Glsi13g0316 1014 CDD RING-Ubox_PUB 265 314 IPR045210 -
Glsi13g0316 1014 SUPERFAMILY RING/U-box 247 330 - -
Glsi13g0316 1014 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Glsi13g0316 1014 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Glsi13g0316 1014 Coils Coil 197 217 - -
Glsi13g0316 1014 Gene3D - 8 123 IPR036537 GO:0007166
Glsi13g0316 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 334 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0316 Glsi-ChrGlsi13 19991435 19995689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0316 264 971 U-box Gene Family AT1G76390 28.121 5.80e-46 176