Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0315 ATGGAACCAGTGGTACCTCCGCCGCCATCGCTGCGGTCTGCCACCGCCATGGCCGCGGCCACCACCATCCTTGGAAAGTACCAATTGATCCGTCTACTGGGTCGCGGTAGCTTCGCCAAGGTCTACCAAGCGCGATCCTTAATCGATGGTAGTACCGTCGCCGTGAAGATCATCGATAAGGCCAAAACAGATGCCGCTATGGAACCTCGAATCGTTCGCGAAGTTGACGCCATGCGCCGCCTTTACGACCACCCAAACATCCTCAAAATCCACGAGGTCATGGCCACCAAGACCAAGATCTACCTCGTCGTCGAATTCGCCGCCGGCGGTGAGCTTTTCTCGAGAATCTCGCGCAAGGGCCGGATGACAGAGTCGGTAGCGCGACGGTACTTCCAGCAATTGGTATCCGCTCTCTGTTTCTGCCACCAGAACGGCGTAGCACACCGCGACGTTAAGCCTCAGAACCTGCTCTTAGACCAGGATGGCAACTTAAAGGTCTCCGATTTCGGACTCTCCGCTTTACCTGAGCAGCTGAAAAACGGATTGCTCCACACCGCCTGCGGCACACCAGCCTACACGGCGCCGGAGATACTCTGCCGGCGCAGCTACGACGGGTCCAAAGCCGATGCGTGGTCGTGTGGGCTCATACTGTACGTATTGCTCGCCGGTTATCTCCCATTCACCGACTTCAACATCCCGGAGATGTGCAAGAAGATTAGCCGGCGCGATTATCATTTCCCAGACTGGATTTCCAAGCCTGCCCGCTTCGTGATCCACCGCCTTCTCGACCCGAACCCGAAGTCGAGGATGAGCTTAGAAGCCCTGTATCAAAACTCGTGGTTCAAGAAATCTCTGAAACCCCAACCCGAAGAGAGCGTATTCGGGTCGGGTTCGTTTGCGAAATCCTACCATAAACCTGAATTGATGGGTTCGGGTGTGAACGCTTTCGACATAATATCCATGTCATCGGGTTTGGACTTGAGGGGCTTGTTCGAAACGACGTCGGGCAACAGGAATGAGAAGAGGTTCACTTCAAAAGCTTCAGTGGGGATGGTAGAGGAGAAGGTGAAGGAAATTGGAGGGGTTTTAGGGTTTAAAGTTGAAATTGGAAAAAATGGAGTAATTGGGTTGGGGAAAGGGAAGGTGGTTTTGGTAGTTGAGGTGTTTGAGATTGTGCCCGGGTTGGTTTTTGTGGCAGTTAAAGTGATGGACGGTGGCTTAGAGTTTGAAGAGCTTCACTGGGGGGACTGGAAAACTGGGCTTCAAGATATTGTTATTTCTTGGCAGAACGAGGCCTTGTGA 1302 0.5323 MEPVVPPPPSLRSATAMAAATTILGKYQLIRLLGRGSFAKVYQARSLIDGSTVAVKIIDKAKTDAAMEPRIVREVDAMRRLYDHPNILKIHEVMATKTKIYLVVEFAAGGELFSRISRKGRMTESVARRYFQQLVSALCFCHQNGVAHRDVKPQNLLLDQDGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILCRRSYDGSKADAWSCGLILYVLLAGYLPFTDFNIPEMCKKISRRDYHFPDWISKPARFVIHRLLDPNPKSRMSLEALYQNSWFKKSLKPQPEESVFGSGSFAKSYHKPELMGSGVNAFDIISMSSGLDLRGLFETTSGNRNEKRFTSKASVGMVEEKVKEIGGVLGFKVEIGKNGVIGLGKGKVVLVVEVFEIVPGLVFVAVKVMDGGLEFEELHWGDWKTGLQDIVISWQNEAL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0315 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Glsi13g0315 433 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0315 433 CDD CIPK_C 314 422 - -
Glsi13g0315 433 Pfam NAF domain 313 368 IPR004041 GO:0007165
Glsi13g0315 433 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0315 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 21 371 - -
Glsi13g0315 433 FunFam Non-specific serine/threonine protein kinase 20 111 - -
Glsi13g0315 433 SUPERFAMILY Protein kinase-like (PK-like) 23 291 IPR011009 -
Glsi13g0315 433 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0315 433 FunFam Non-specific serine/threonine protein kinase 17 294 - -
Glsi13g0315 433 Gene3D Transferase(Phosphotransferase) domain 1 18 309 - -
Glsi13g0315 433 Gene3D Kinase associated domain 1, KA1 310 426 - -
Glsi13g0315 433 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Glsi13g0315 433 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0315 Glsi-ChrGlsi13 19818708 19820009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0315 7 433 Miscellaneous Gene Families AT3G23000 58.756 1.43e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi13g0315 Pkinase 7.4e-69 CL0016