Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0306 ATGAGAAGTGGCAAACTCCTTGACATCTCTGCTTTGTTGCTCTTCTTCTTCCTACTCTTCCTTCATCCTTCACAAGCCCAGAACAAGATTGAACCAAACACCACAGGCTACAAGTGCCCCGCCAACCAGAGCTACTACCCATGCCAAACCTATGCTTTCTACCGAGCCAACGCTCCAAATTTCCTCGACCTGGGCTCCATAGGCGACCTCTTCTCTGTTAGCCGCCTCATGATTTCAACCCCCAGCAATATTTCCTCCCCTTCTTCCCCTTTAGTCCCTGGCCAACCCCTCTTTGTTCCATTATCTTGCTCCTGCAACCTAATCAATTCCACCTTCGGTGCCATCTCTTATGCGAACCTTTCGTACACCATCAAGCCCAACGACACTTTCTACATCGTCTCGACCTTCAATTTCCAGAACCTCACAACCTACGAATCTGTGGAGGTTGTTAATCCAACTCTTGTCGCGACAAACCTATCGATCGGTGATAACGCTGTATTCCCGGTCTTCTGCAAGTGCCCCAACAGAACCCAAAAGCAAAACCAAACCAATTACCTAATCTCTTATGTGGTCCAACCATCTGACAACGTATCATCGATTGCTTCGAGGTTCGGATCACAAGCACAGGCTATAACCGATATTAATGGCCATGGTTTCCGGGAATTTGATACTATATTTGTTCCGGTGACTCGGTTGCCGGTGCTGTCGCAGTCTGCGGTTGTTCCTTCTCCTGCTCCTGCTCCTGCTTCTGTTCCTGTTGGAAAATCCGATGATAGAAAAGGTACTGTCACAGGATTGGCAATTGGGTTAGGGATTGTTGGGTTGTTGTTGATTTTGGTTACTGGGTTTTGGGTTTATAGAGAGGTTCTGTTCAAAAATCGGGTGTGGATGGCGGGAGATAAGGAAAAACAGAAGCAAACCTTTTATGGGGGAGGCAAAGACACCAAAGAGTCGAAGGACCTGGAAGTGAAATTGATGGCAAACGTATCGGATTGTTTGGACAAGTACAGGGTTTTTGAATTTGAAGAACTGAAAGAAGCCACTAATGGGTTTGATGATAGTTGCTTGATCCTGGGTTCTGTGTATAAAGGGTCAATTGATGGGGAGGTCTATGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTGAACCATGGGAATTTGGTGAGGTTGGAGGGATTTTGCATAGACGCAGAAGATGCAAACTGCTATCTTGTCTATGAATACGTTGAGAATGGATCTCTCTACTCACGGTTGCACGAGGATAGGGACGAAACGCTAAACTGGAAAACAAGGCTACGCATTGCCATCGACGTTGCGAATGGCCTCCAATATATCCATGAGCACACAAGGCCAAGGGTTGTGCACAAAGACATAAAGAGCAGCAACATTCTCTTGGACTCCAACATGAGAGCCAAAATTGCCAATTTTGGGCTCGCAAAGTCAGGAATGAATGCCATTACAATGCACATTGTGGGAACTCAAGGCTACATAGCCCCCGAATATCTAGCAGATGGTGTGGTCTCAACAAAGATGGACGTGTTTGCCTTTGGGGTGGTGTTGCTTGAACTGATTTCAGGGAGAGAAGCCATTGATGAAGATGGAAATGAGCTCTTGTGGCAAACTGCCGTTAGAACTTTTGAAGTGGGTAACGAGCAAGAGAAAGGTAGGAGACTGAGGGAGTGGTTGGATAGAGATATATTGAGGGAGACATGCTCATTGGAAAGTTTGATGAGTGCGCTCAATATTGCCCTTGCTTGCCTGCATAGGGACCCATCAAAGAGGCCTAGTATGGTTGACATTGTGTATACACTATGCAAAAGTGAAGACAGTGGCTTTGAAACCTCAGACGATCAAATAGATTCTCCATTGATAACGGCCAGGTGA 1908 0.4617 MRSGKLLDISALLLFFFLLFLHPSQAQNKIEPNTTGYKCPANQSYYPCQTYAFYRANAPNFLDLGSIGDLFSVSRLMISTPSNISSPSSPLVPGQPLFVPLSCSCNLINSTFGAISYANLSYTIKPNDTFYIVSTFNFQNLTTYESVEVVNPTLVATNLSIGDNAVFPVFCKCPNRTQKQNQTNYLISYVVQPSDNVSSIASRFGSQAQAITDINGHGFREFDTIFVPVTRLPVLSQSAVVPSPAPAPASVPVGKSDDRKGTVTGLAIGLGIVGLLLILVTGFWVYREVLFKNRVWMAGDKEKQKQTFYGGGKDTKESKDLEVKLMANVSDCLDKYRVFEFEELKEATNGFDDSCLILGSVYKGSIDGEVYAIKKMKWNAYEELKILQKVNHGNLVRLEGFCIDAEDANCYLVYEYVENGSLYSRLHEDRDETLNWKTRLRIAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVVLLELISGREAIDEDGNELLWQTAVRTFEVGNEQEKGRRLREWLDRDILRETCSLESLMSALNIALACLHRDPSKRPSMVDIVYTLCKSEDSGFETSDDQIDSPLITAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0306 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Glsi13g0306 635 SMART serkin_6 351 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0306 635 ProSiteProfiles LysM domain profile. 187 234 IPR018392 -
Glsi13g0306 635 Gene3D Phosphorylase Kinase; domain 1 321 416 - -
Glsi13g0306 635 Gene3D Transferase(Phosphotransferase) domain 1 417 629 - -
Glsi13g0306 635 Pfam Protein kinase domain 359 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0306 635 Pfam LysM domain 189 218 IPR018392 -
Glsi13g0306 635 CDD LysM 187 216 IPR018392 -
Glsi13g0306 635 FunFam PTI1-like tyrosine-protein kinase 3 417 626 - -
Glsi13g0306 635 Gene3D LysM domain 173 234 IPR036779 -
Glsi13g0306 635 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 13 615 - -
Glsi13g0306 635 SUPERFAMILY Protein kinase-like (PK-like) 336 612 IPR011009 -
Glsi13g0306 635 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0306 Glsi-ChrGlsi13 19609561 19614143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0306 6 614 Receptor kinase-like Gene Family AT2G23770 33.856 2.32e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi13g0306 Pkinase 2.6e-42 CL0016