Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0301 ATGGGCGTCCAAAGCCCTTTAAGCAATTCAAAAGCTGTGGCCCACATGGATACCCTTTTAGCTTCAGCCTCTGAGGATTATTGCAGAAGAATCAAAAGCTTTGCTTGGTGTGTTATTTGGTTTGTTTTTCTGGGAAAAATGGAAAACAAAGTTGGGTATGAGAATGATCTGAATCTCAAGGCAACAGAGCTTAGATTGGGGTTGCCAGGGACAGAGGAAAGGGAAGACCATCAACCTCTGCCTAGTGCTGCTAGGAACAACAAAAGGGCATTGCTTGAAACTTCTGAAGATTGTGGATCAAAGGGCTCTAATGCTCAAGATGTTGATAGTGATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGATCAGCCTTCAGGAGGCTGAGGGTTCGGGGATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAGATTGATTTGAGGGTTTACAATGGCTACCCAGAACTCCTTAAAGCTCTGGAGAACATGTTCAAGTTAACTATAGGTCAGTACTCTGAAAGGGAGGGTTACAAGGGATCAGAATATGCACCTACATATGAAGACAAGGACGGTGACTGGATGCTTGTTGGAGACGTTCCATGGGATATGTTTATGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGATCAGATGCTAGAGGTTTGGGTTGTGGGGCATGA 717 0.4547 MGVQSPLSNSKAVAHMDTLLASASEDYCRRIKSFAWCVIWFVFLGKMENKVGYENDLNLKATELRLGLPGTEEREDHQPLPSAARNNKRALLETSEDCGSKGSNAQDVDSDAAPPAKAKIVGWPPIRSYRKISLQEAEGSGIYVKVSMDGAPYLRKIDLRVYNGYPELLKALENMFKLTIGQYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSDARGLGCGA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0301 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 57 232 IPR003311 GO:0005634|GO:0006355
Glsi13g0301 238 MobiDBLite consensus disorder prediction 94 116 - -
Glsi13g0301 238 Gene3D - 135 238 - -
Glsi13g0301 238 ProSiteProfiles PB1 domain profile. 141 228 IPR000270 GO:0005515
Glsi13g0301 238 FunFam Auxin-responsive protein 136 238 - -
Glsi13g0301 238 SUPERFAMILY CAD & PB1 domains 136 227 - -
Glsi13g0301 238 Pfam AUX/IAA family 62 235 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0301 Glsi-ChrGlsi13 19436080 19437464 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0301 78 227 B3 DNA Binding Superfamily AT1G35520 30.178 3.85e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi13g0301 AUX_IAA 1.4e-51 CL0072