Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0299 ATGGCAACTTCGCTGGGGAAGGAGGAGCATCATCATGATTTGAACCTGAAGGAGACTGAGCTTTGTCTGGGATTGCCTGGTGGTGGTGCTGGAGGTGGAAACACTGAGGTGGAAACCCCAAAGGCCTTCACGGGGAAGAGAGCCTTCTCTGCAACTGTTGATCTCAAGCTTAATCTAGAATCCAAGGACGAAGATCTGAATGAGAATTTGAAGAATGTCTCAAAGGAGAAGAGCCTTCTTAAGGACCCAGCTAAGCCACCAGCTAAGGCACAAGTGGTGGGTTGGCCACCAGTGAAGTCACACAGGAAGAATATTATGGCACAAAAGGTGAACACTGAAGAAGGTAGTGATCAGAAGACAACAAGCAGTGCTTCAGCTGGAGCATTTGTCAAGGTTTGCATGGATGGTGCACCCTACCTTCGCAAAGTGGACTTGAAAATGTACAAAAGCTACCAAGAATTATCTGATTCCTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCTATTGGCCTTGCACCAAGAGCCATGGAAAAATGCAAAAGCAGAAGCTGA 738 0.4661 MATSLGKEEHHHDLNLKETELCLGLPGGGAGGGNTEVETPKAFTGKRAFSATVDLKLNLESKDEDLNENLKNVSKEKSLLKDPAKPPAKAQVVGWPPVKSHRKNIMAQKVNTEEGSDQKTTSSASAGAFVKVCMDGAPYLRKVDLKMYKSYQELSDSLAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0299 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Glsi13g0299 245 SUPERFAMILY CAD & PB1 domains 121 226 - -
Glsi13g0299 245 Gene3D - 122 239 - -
Glsi13g0299 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 232 IPR003311 GO:0005634|GO:0006355
Glsi13g0299 245 FunFam Auxin-responsive protein 122 237 - -
Glsi13g0299 245 Pfam AUX/IAA family 19 236 IPR033389 -
Glsi13g0299 245 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0299 Glsi-ChrGlsi13 19406863 19408747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0299 114 235 B3 DNA Binding Superfamily AT4G23980 33.065 8.51e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi13g0299 AUX_IAA 1e-81 CL0072