Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0274 ATGTTTTCTCATTGTTATCGCTTTGCATGCCTCTATCTCCTGCTGGGTTTGGGATTAGAACTAGCAAATGCACAGCTTTATAAAAGAGTGGGAGATAACCTGGTCCCTTATTGGGAAATCATTGTCGACCATGCTGGGAACGGAAACTTCTCCACCATACAATCCGCCATTGATTCGGTGCCTTCTAACAACAGGTTTTGGGTTTCCATCAAAGTGAAGGCAGGCACCTACAGGGAAAAGGTGAAGATTCCTTACGACAAGCCTTATATCATACTAAAAGGAGAGGGCAAGAGGAAAACTCAAGTTGTTTGGGATGACCATGATTCAATCACGCAGAGTCCTACATTCACATCCATGGCTGACAATGTTGTCGTCAAATGCATGAGCTTTAGGAATTCTTACAATAATCCAGTTAATAGTAACCCCAGGAGACCAGCAGTAGCAGCAATGATAATGGGTGACAAGTCTCACTTCTTTCGAGTTGGTTTCTTTGGTTTACAAGATACTTTATGGGACGATCAAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCCGTTGATTTTATTTTTGGCGCCGGCCAATCTATATTTGAGAGATGTTCCATATCAGTAATTGGGGCGGCTCTAGAGGCAGGCCTTCCTGGTTTCATCACAGCACAGGGGAGAACAAATCCAAATGATGCAAATGGGTTTGTGTTTAAGGAATGTAATGTCTTCGGAAATGGTTCGACTTACCTGGGAAGGCCTTGGAGAGGTTACGCCAGAGTTCTTTTCTACAAAAGCAATATGTCCAATATCGTACAACCTAAGGGTTGGGAGCCATGGGGTTTCGTTGGCCATGAGAATCACATAATATTTGCTGAGTATGGCTGTTTTGGACCTGGGTCTGACACTTCCCAGCGAGTGAGTTGGACAAGGAAGCTGGATTTACGAACGGTTGAACAGATGGCAAGCATGAGTTTCATAGACACTGAAGGTTGGCTTCAGGACAATCCGTTTTGA 1008 0.4395 MFSHCYRFACLYLLLGLGLELANAQLYKRVGDNLVPYWEIIVDHAGNGNFSTIQSAIDSVPSNNRFWVSIKVKAGTYREKVKIPYDKPYIILKGEGKRKTQVVWDDHDSITQSPTFTSMADNVVVKCMSFRNSYNNPVNSNPRRPAVAAMIMGDKSHFFRVGFFGLQDTLWDDQGRHYYKLCTIQGAVDFIFGAGQSIFERCSISVIGAALEAGLPGFITAQGRTNPNDANGFVFKECNVFGNGSTYLGRPWRGYARVLFYKSNMSNIVQPKGWEPWGFVGHENHIIFAEYGCFGPGSDTSQRVSWTRKLDLRTVEQMASMSFIDTEGWLQDNPF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0274 335 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Glsi13g0274 335 Pfam Pectinesterase 40 325 IPR000070 GO:0030599|GO:0042545
Glsi13g0274 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 331 - -
Glsi13g0274 335 Gene3D - 38 334 IPR012334 -
Glsi13g0274 335 SUPERFAMILY Pectin lyase-like 37 331 IPR011050 -
Glsi13g0274 335 FunFam Pectinesterase 36 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0274 Glsi-ChrGlsi13 18704257 18715345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0274 40 283 Carbohydrate Esterase AT2G19150 47.347 9.39e-78 238