Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g0264 | ATGAGAGGCCGAGATGGAATGGCAGATCCTGCTAGTTATGGGAATCCTGAGCGTGATATTGAGCAAGCACTTATTGCTTTGAAAAAAGGCACTCAATTACTCAAGTATAGTCGGAAAGGGAAGCCAAAATTTCGTCCATTCAGACTCTCGCCGGATGGAACAACACTGATCTGGATTTCTCATGGAGTAGAAAAGAATCTAAATTTGTCTTCTGTTTCACGTATTATCCCTGGACAGAGAACTGCTGTCTTTAGAAGGTACTTGCGCCCTGAAAAAGATTATCTGTCATTTTCACTTCTTTATAAACAGGGGGAACGATCACTTGATCTGATCTGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGCCTTAAGGCATTAATTACTACTAGACAGCGTACTAAGCGAACTAGAAGTGACTTATCCGATCTACAGGATGGTGTTGACTTTATTCAGACTAGTCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCCCGTGGTAGGGATTCTATTGATTCAGGATCTCGTGAATCTCCTCCGTATTGGGCAACCTCAGATGCGGGGTCAGAGCATGCAAATATGCAACTAAAGGCAAGTGCTGGAGATGGATTTCGTGTCAGTGTGTCAAGTGCACATAGCTGTTCAAGTGCAGGATCTGGACCTGATGACATAGAGTCACTAGGTGATGTTTATATATGGGGAAAGGTTTGGGCAGATGGGGTTTCATCTGATGGATTGGGGAGTCAGGTTCCTTTGATGACAGATGTGCTGATTCCTAAGTCATTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGCGCCACATTACTCTAGTTACAAGGCAAGGAGAGGTTTTTTCTTGGGGAGAGGAATCTGGGGGAAGACTTGGTCATGGGATTGATAAAGATTTTTGTCACCCCCATCTTGTTGAGTCGCTGGCTGTTACCAATATCGAATTTGTTGCATGTGGGGAGTTTCATACGTGTGCTGTTTCTACATCCGGTGATCTATTCACCTGGGGAGATGGCGCACATAATGCTGGACTTCTTGGACATGGCACCAATGTTAGTCACTGGATACCCAAGAGGGTCAATGGCCCTTTAGAAGGGCTTCAAGTATTATCCGTTTCATGTGGCACATGGCATTCAGCATTGGCAACCTCCAATGGAAAACTGTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGCACAAGTGTGTCATATCCAAAGGAGGTACAATCATTGAGTGGCCTAAAGACTATTAAAGTTGCATGTGGTGTATGGCACACTGCTGCCATTGTAGAAGTTATGGGTCATCATGGTACAAATGTTTCATCCAGGAAGCTCTTCACCTGGGGCGATGGTGACAAATATCGTTTGGGTCATGGAAACAAGGAAACCTACCTTCAACCCACCTGTGTCTCTGCACTTATTGAATATAATTTCAACCAGATAGCTTGTGGACACACTATGACTGTTGCTCTCACTACATCAGGTCATGTCTTTATTGTAGGAGGCACTTCATATGGTCAACTAGGAAATACTTTGTCTGATGGAAAAACACCTATGCTAGTTCAAGATAAGTTGGTGGGTGAATTTGTTGAGGAAATATCATGTGGATCCCATCATGTTGCTGTCTTGACGTCAAGAAGTGAACTGTACACTTGGGGGAGAGGAGAAAATGGAAGATTGGGACATGGAGACACAGAAGACCGGAAATCTCCAACGTTGGTGGAAGCTTTGAAAGATAGGCATGTAAAAAATATCTCATGTGGTTCAAACTTTACATCTTGTATATGCATCCATAAATGGGTCTCTGGAGCTGACCAATCGGTTTGCTCTGGTTGTCGGCAAGCATTTGGCTTTACTAGAAAAAGACACAATTGTTATAATTGCGGGTTAGTGCATTGCCATGCTTGCAGTTCCAGGAAGGCGTTGAAAGCAGCATTGGCTCCAACCCCAGGAAAACCACATCGTGTGTGTGATGGCTGTTATAGTAAGCTTAAAGCTGCGGAGGCTGGTAATTTTTCCACTTCTAATAGAAGAGTTACTCCTCCTTGCTGTTCCACAGATGGCAGAGAAAGATTAGACCGGGGAGAGGTGAAGTCTTCCAGAATTCTCTTGTCTTCTATCACTGAACCAGTCAAATACCTTGAGTTATGGAGTAATAAGTTTGACACCAAATGTGATTCTTCTTCCATAGTCCGAGCTTCTCAAATTCCATCATTTTCACAACTGAAAGATGTCGCTTTTCCAACATCATTGAGCTCCATTCATAGTGCTTTCAAGACTGCAGCTGTGAATTTAAGTCCACCACCAACTCCACCAGCCAATTCAAGATCTGGATCACCATATGCAAGAAGACCAAGTCCACCACGTTCTGCTACCCCTGGATTTTCTAGAAACATTATTGACAGTTTGAGGAAGACAAATGAGCTTTTGAACCAAGAAGTCTCGAAATTGCAAAACCAAATTCGAAGTTTGAAGCAGAAGAGTGACATGCAAGATTTGGAGATTGAGAAGCTACAGAAAAACGTTAAGGAAGCTACCTCATTGGCTGGAGAGGAATCTTCTAAGCGTAGAGTAGCAAAGGAATTTATTAAGTCCATGACTGATCAGTTGAAGGAAGTGACCCAGAATTTGCCACCAGACATTCCAAACAGTGAAACCTTGAGTACCATGCATGTGCAAGCTGAAGATTTTCTAAAAGAAAATCCAGAATCTAAATCTTCTTCCATACTATCAAGCTTGGAGTCTAACCAACAAAATTCACCTGATATACCTGCCTCAGATAGTGACTGCTCTAAACTGCAAGAACACAAACTGGAAGGAACTGTCGATGCTTCTGGAGTTGAATCATCTCAAGATGGAGATAATTCTGTTCAGGAAAGGAACAGATCAATTGTCTCAAGAACAGAGGTAGCAGCTCCTCCTCAAAGCTCAGAAAATGGTTCACAATCACCGGACTCTTCGAGAACTGGGAGAGATAGAGAGACGCAAGTGATCGAACAATTTGAACCTGGTGTTTATGTGACACTCATACTACGGCCAAGTGGTAACAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGTTAAGGAAATATAACCCATCAGCAACAAATCCTGCAGCTACTGGGCCACCTAGCAGTAGTCGACTACCAACTGAGGAGAACATCGAGGCATCACCTTCCTGA | 3288 | 0.4319 | MRGRDGMADPASYGNPERDIEQALIALKKGTQLLKYSRKGKPKFRPFRLSPDGTTLIWISHGVEKNLNLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLLYKQGERSLDLICKDKAEAEVWFAGLKALITTRQRTKRTRSDLSDLQDGVDFIQTSRPFGATLEFTSSIARGRDSIDSGSRESPPYWATSDAGSEHANMQLKASAGDGFRVSVSSAHSCSSAGSGPDDIESLGDVYIWGKVWADGVSSDGLGSQVPLMTDVLIPKSLESNVVLDVQQIASGVRHITLVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLVESLAVTNIEFVACGEFHTCAVSTSGDLFTWGDGAHNAGLLGHGTNVSHWIPKRVNGPLEGLQVLSVSCGTWHSALATSNGKLFTFGDGTFGVLGHGDRTSVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGHHGTNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFNQIACGHTMTVALTTSGHVFIVGGTSYGQLGNTLSDGKTPMLVQDKLVGEFVEEISCGSHHVAVLTSRSELYTWGRGENGRLGHGDTEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSRKALKAALAPTPGKPHRVCDGCYSKLKAAEAGNFSTSNRRVTPPCCSTDGRERLDRGEVKSSRILLSSITEPVKYLELWSNKFDTKCDSSSIVRASQIPSFSQLKDVAFPTSLSSIHSAFKTAAVNLSPPPTPPANSRSGSPYARRPSPPRSATPGFSRNIIDSLRKTNELLNQEVSKLQNQIRSLKQKSDMQDLEIEKLQKNVKEATSLAGEESSKRRVAKEFIKSMTDQLKEVTQNLPPDIPNSETLSTMHVQAEDFLKENPESKSSSILSSLESNQQNSPDIPASDSDCSKLQEHKLEGTVDASGVESSQDGDNSVQERNRSIVSRTEVAAPPQSSENGSQSPDSSRTGRDRETQVIEQFEPGVYVTLILRPSGNKVFKRVRFSKRRFDEHQAEEWWNKNKDRVLRKYNPSATNPAATGPPSSSRLPTEENIEASPS | 1095 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0264 | 1095 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 620 | 682 | IPR017455 | - | |
| Glsi13g0264 | 1095 | Pfam | Transcription factor BRX N-terminal domain | 868 | 903 | IPR027988 | - | |
| Glsi13g0264 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 291 | 339 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 397 | 446 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 462 | 508 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 342 | 393 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 565 | 612 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1012 | 1066 | IPR013591 | - | |
| Glsi13g0264 | 1095 | Pfam | Pleckstrin homology domain | 21 | 129 | IPR001849 | - | |
| Glsi13g0264 | 1095 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 436 | 446 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Coils | Coil | 817 | 872 | - | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 400 | 414 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 293 | 309 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 559 | 580 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 343 | 359 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 501 | 519 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PRINTS | Chromosome condensation regulator RCC1 signature | 384 | 400 | IPR000408 | - | |
| Glsi13g0264 | 1095 | SMART | fyve_4 | 614 | 683 | IPR000306 | GO:0046872 | |
| Glsi13g0264 | 1095 | Gene3D | - | 454 | 617 | IPR009091 | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 512 | 563 | IPR000408 | - | |
| Glsi13g0264 | 1095 | Gene3D | - | 187 | 453 | IPR009091 | - | |
| Glsi13g0264 | 1095 | Gene3D | - | 19 | 139 | IPR011993 | - | |
| Glsi13g0264 | 1095 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 618 | 692 | IPR013083 | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | BRX domain profile. | 1012 | 1067 | IPR013591 | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 398 | 449 | IPR000408 | - | |
| Glsi13g0264 | 1095 | CDD | FYVE_like_SF | 626 | 678 | - | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 460 | 511 | IPR000408 | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 780 | 813 | - | - | |
| Glsi13g0264 | 1095 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 203 | 451 | - | - | |
| Glsi13g0264 | 1095 | SUPERFAMILY | RCC1/BLIP-II | 232 | 617 | IPR009091 | - | |
| Glsi13g0264 | 1095 | SUPERFAMILY | PH domain-like | 19 | 129 | - | - | |
| Glsi13g0264 | 1095 | Pfam | FYVE zinc finger | 616 | 682 | IPR000306 | GO:0046872 | |
| Glsi13g0264 | 1095 | CDD | PH_PLC_plant-like | 18 | 129 | - | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 343 | 397 | IPR000408 | - | |
| Glsi13g0264 | 1095 | SUPERFAMILY | FYVE/PHD zinc finger | 616 | 684 | IPR011011 | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 1069 | 1095 | - | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 1057 | 1095 | - | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 961 | 1003 | - | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 291 | 342 | IPR000408 | - | |
| Glsi13g0264 | 1095 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 64 | 893 | - | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 917 | 1016 | - | - | |
| Glsi13g0264 | 1095 | MobiDBLite | consensus disorder prediction | 920 | 944 | - | - | |
| Glsi13g0264 | 1095 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 564 | 615 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g0264 | Glsi-ChrGlsi13 | 17787391 | 17796459 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0264 | 1009 | 1082 | Major Intrinsic Protein MIP | AT1G31880 | 37.838 | 2.09e-10 | 62.0 |