Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0263 ATGGGGCAACGGCAATCCAAGGGCGAGCTGCTTTACCAGCAAGTCAGTTATGGGAACGTCGAAGGAATCGAAACCCTTCACCGGGAAGGAGCAGGTTTAGAGTGGGTGGACAGAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTATGGCGTCGCCAAAACTTTGATAGAACTTGGTGCCAATATCAATGCATTCCGTCCTGGTCGACATGGTGGGACTCCATTACATCATGCAGCTAAAAGAGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGAATGGAGCCAATGCTTTGGTCTTGAATGATGATTGCCAAACTGCTCTTGACGTTGCTAGGGCCAAAGACCACAGCAACGTTGTTCGTGCTATTGAGAGTCATCTTTGCTTATTCTCTGGCTGGCTGCGGGAGTTTCATGGACCTGGATTCCTAGAAGTAGTAGCTCCTCAATTGGTATCTAGGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCTCGTAATCTTACCAGACCCTACAAGCTGGAGCTTGCCATATATTCTAGTTTGCAGGACGCACAACCACGTACAGTTGTTGCACTCTGGAAGGCCAACTTAGAACAACCGAAGCTACACCAGTCTGACCCTTCAGTGGCTATCGCTGATAGCACTACCAAAACACGTATTAAACTTTCACCTGCAAGTGAGAATGAGAAGCAACAACTTCAGTGGTTTTCTGATGCATGTAAGGGAATTCCACAGGCAAATCCACCATTTTTGCACAATAACATGAGTACGGTTCCTCCCACAGCACCACCAGCTGCAGAAGATCTAGAGATGGTTACTGCTATCAGAGTATCCGTTCAGGATGCCATGCAGGAGAGGCTACCCCTTTCTGGTGGCCAGCCAAACTTTGAAGCAAGTTCTTCAAGTGGTGGAGTGAATACAAGCAAGCATAGTTCGTTGGGTGGCCCAAATCCAAATACAAGTGGTAGTGAGCCTGAACTCATAGGTGGACCAGGTGGCAATTCTAGTCAGCATGTCCATATCCATGGCAATGTATCCACTTCTAGCTGTCTGGATTCGATTCCATCAGCTCCTCCAATTGAAGAAAATAATGCTGTTGGAAGTGGTTCATGTTGCGTGATTTGTTTGGATGCTCCAGCTGAGGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGTATGTCTTGCTTGAATGAGGTAAAAGCAAAGAAGTGGGGTTGCCCAGTGTGTCGATCAAAGATCGACCAAGTTATAAAGATATATCATGTTTGA 1287 0.4639 MGQRQSKGELLYQQVSYGNVEGIETLHREGAGLEWVDREGKTPLIVACMNPELYGVAKTLIELGANINAFRPGRHGGTPLHHAAKRGLESIVKLLLLNGANALVLNDDCQTALDVARAKDHSNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSRKVWVVVLPVGSRNLTRPYKLELAIYSSLQDAQPRTVVALWKANLEQPKLHQSDPSVAIADSTTKTRIKLSPASENEKQQLQWFSDACKGIPQANPPFLHNNMSTVPPTAPPAAEDLEMVTAIRVSVQDAMQERLPLSGGQPNFEASSSSGGVNTSKHSSLGGPNPNTSGSEPELIGGPGGNSSQHVHIHGNVSTSSCLDSIPSAPPIEENNAVGSGSCCVICLDAPAEGACIPCGHVAGCMSCLNEVKAKKWGCPVCRSKIDQVIKIYHV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0263 428 SMART ANK_2a 75 104 IPR002110 GO:0005515
Glsi13g0263 428 SMART ANK_2a 39 69 IPR002110 GO:0005515
Glsi13g0263 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 427 IPR013083 -
Glsi13g0263 428 Gene3D - 3 148 IPR036770 -
Glsi13g0263 428 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Glsi13g0263 428 SUPERFAMILY RING/U-box 372 422 - -
Glsi13g0263 428 SUPERFAMILY Ankyrin repeat 10 133 IPR036770 -
Glsi13g0263 428 MobiDBLite consensus disorder prediction 293 346 - -
Glsi13g0263 428 PANTHER ROLLING PEBBLES, ISOFORM B 372 425 - -
Glsi13g0263 428 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Glsi13g0263 428 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Glsi13g0263 428 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Glsi13g0263 428 CDD RING-HC_XBAT35-like 377 426 - -
Glsi13g0263 428 Pfam Zinc finger, C3HC4 type (RING finger) 375 422 - -
Glsi13g0263 428 SMART ring_2 377 415 IPR001841 -
Glsi13g0263 428 MobiDBLite consensus disorder prediction 298 329 - -
Glsi13g0263 428 ProSiteProfiles Zinc finger RING-type profile. 377 416 IPR001841 -
Glsi13g0263 428 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0263 372 425 C3H Transcription Factor Family AT3G06140 37.037 2.29e-08 53.9