Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0254 ATGCATCACGTTATTGGCGGAAAATTTAAGCTCGGGCGGAAGATTGGGAGTGGATCTTTTGGCGAGCTTTATTTGGGCGTAAATGCACAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAACCTGTGAAAACCAAGCATCCTCAACTTCACGATGAGTCAAAATTATATATGCTTCTTCAAGGAGGAACTGGAATACCCCATTTAAAATGGTTTGGAGTTGAAGGTGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTAGAAGACTTGTTTAACTATTGCAATAGGAAACTCTCTCTGAAAACAGTTCTGATGCTCGCAGATCAGCTAATAAATAGAGTTGAGTACATGCATTCCCGGGGTTTTCTTCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAAGCAAACCAGGTATACATTATTGATTATGGCCTTGCAAAAAAGTATTGGGATCTTCAAACTCATAAGCACATACCATACAGGGAAAGCAAGAATCTCACTGGAACTGCTCGGTATGCAAGTGTTAACACTCACCTGGGAGTTGAACAAAGCAGAAGAGATGACCTTGAGTCGCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCTTAAAAGCTGGGACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTGACTCCAATAGAGGTCATATGCAAGTCATATCCATTGGAATTCACATCATACTTCCACTACTGCCGCTCGTTGCGCTTTGAAGACAAACCTGATTATTCATACCTAAAGAGGCTTTTTCGGGACCTATTCATTAGAGAAGGCTATCAGTTTGACTATGTTTTTGATTGGACTATGCTGAAGTATCCACAAATTGGTTCCAGTTCTAGAGCACGACAGTCAAGTGGGAAAATGGTTGTAAACCCTGGACCATCTGCAGGGAGATTAGAACGGCCTTCAGTTGGAAAAGAGATTCGGGATAGACTCTCGGGTGCAGTTGAGGCATTTGCTAGAAGGAATGGTTCTGGTCATGGTCTGCATAGTGATCACTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCAAAAGATGTGCAACCTGATTCTGAGAGGGTTCATATTTCTTCTCGTAATGACAGTGCCTCAAAAAGGCCTGTCATATCAAGCAGCCGACCAAACTCCTCTGGTGAGCCTACTGAAAGCCGTTCTAATCGATTGGTCTCAAGCAGTGGTAGGCTATCCACTACTCAGAGGATTCAACCAGGGTTTGAGTCGAAGACATCATCTTTTACCCGTGCTGCAGCCACAAGAAGTGGTCGTGATGATACACTAAGGAGCTTTGAGCTCCTGTCAATTGGTACAGGGAAAAGGAAATGA 1395 0.4308 MHHVIGGKFKLGRKIGSGSFGELYLGVNAQSGEEVAVKLEPVKTKHPQLHDESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYWDLQTHKHIPYRESKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVICKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARQSSGKMVVNPGPSAGRLERPSVGKEIRDRLSGAVEAFARRNGSGHGLHSDHSRHRSSDDVPSSKDVQPDSERVHISSRNDSASKRPVISSSRPNSSGEPTESRSNRLVSSSGRLSTTQRIQPGFESKTSSFTRAAATRSGRDDTLRSFELLSIGTGKRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0254 464 MobiDBLite consensus disorder prediction 385 442 - -
Glsi13g0254 464 MobiDBLite consensus disorder prediction 349 384 - -
Glsi13g0254 464 PANTHER CASEIN KINASE-RELATED 8 380 - -
Glsi13g0254 464 CDD STKc_CK1_delta_epsilon 8 282 - -
Glsi13g0254 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Glsi13g0254 464 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0254 464 MobiDBLite consensus disorder prediction 304 329 - -
Glsi13g0254 464 FunFam Putative Casein kinase I 1 85 - -
Glsi13g0254 464 Gene3D Transferase(Phosphotransferase) domain 1 1 320 - -
Glsi13g0254 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0254 464 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Glsi13g0254 464 FunFam Casein kinase 1-like protein 1 330 - -
Glsi13g0254 464 MobiDBLite consensus disorder prediction 345 448 - -
Glsi13g0254 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Glsi13g0254 464 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0254 Glsi-ChrGlsi13 17219688 17225238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0254 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.10e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi13g0254 Pkinase 6.2e-26 CL0016