Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0250 ATGGAGGAGCACCAGAAAGGGAAGCAGGACAAGGAGGAGAAGCCGAGGGAAGAAGTCCGGTACCGGGGGGTCCGACGGAGGCCGTGGGGGAAGTACGCGGCTGAGATAAGAGACCCAAATAAGCAAGGGGCAAGGCTGTGGCTAGGGACATTTGAAACGGCGGAAGATGCAGCACGAGCTTATGATCGAGCTGCTTTTGACTTGAGGGGTTATCGTGCAGTTCTTAATTTTCCTAAAGAATATGATCCTCCTCAAGTAGGGGGCTTGCCGCCATACGCACCACATTTAGCACCGTCATCGTCTTTCTCTTCTCATGGTGGTGCCAGTGGAAGTTCGTCATCTGCTGCACAGCAGAGGGAAGTTTTTGAGTTTGTGTGTTTGGATGATAAGGTTTTGGAGGATCTCCTTGATGAGTTTGAAGAGGAGAAGAAAAAAGTGGGAGATTGA 447 0.5078 MEEHQKGKQDKEEKPREEVRYRGVRRRPWGKYAAEIRDPNKQGARLWLGTFETAEDAARAYDRAAFDLRGYRAVLNFPKEYDPPQVGGLPPYAPHLAPSSSFSSHGGASGSSSSAAQQREVFEFVCLDDKVLEDLLDEFEEEKKKVGD 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0250 148 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g0250 148 PANTHER DNA-BINDING DOMAIN 8 133 IPR044808 GO:0003700|GO:0009873
Glsi13g0250 148 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Glsi13g0250 148 MobiDBLite consensus disorder prediction 97 116 - -
Glsi13g0250 148 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Glsi13g0250 148 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Glsi13g0250 148 MobiDBLite consensus disorder prediction 80 116 - -
Glsi13g0250 148 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0250 Glsi-ChrGlsi13 16821885 16822331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0250 17 145 AP2-EREBP Transcription Factor Family AT3G23230 63.359 1.22e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g0250 AP2 1.8e-14 CL0081