Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0249 ATGGATGAAGGAGAGTCAAGAAGAAAGGCCAAGGAGGATGGAGGAGATCATGTCTGGTACCGAGGTGTTCGGGGGCGGCCATCGGGGAAATTCGCAGCAGAGATTCGTCACTCGATGAGGAAGGGTCAACGGGTGTGGCTGGGAACTTTTAACATGGAGGAGGAAGCAGCCAGCGCCTATGACAGAGCTGCTTATGCTATGAGAGGTTCATTCGCAATTCTCAACTTCCCAAATGAATACCCTTCGTCAGCTAGTGGTGGAACTGCCTCTGCTGCTTTGGCTTCATCATCTTCATCTTCTTTAAAGCATGAGAATAAGGAAGAGATCAGAGGCAGGACTGAGCATGGAGAACAAGTCATCGAGTTCGAGTACTTGGACGACAAATTGTTAGAGGATCTTCTTGATTATGAAGAGAACAAGAAAAAGGGAATGTGA 435 0.4782 MDEGESRRKAKEDGGDHVWYRGVRGRPSGKFAAEIRHSMRKGQRVWLGTFNMEEEAASAYDRAAYAMRGSFAILNFPNEYPSSASGGTASAALASSSSSSLKHENKEEIRGRTEHGEQVIEFEYLDDKLLEDLLDYEENKKKGM 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0249 144 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Glsi13g0249 144 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g0249 144 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 MobiDBLite consensus disorder prediction 83 100 - -
Glsi13g0249 144 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 MobiDBLite consensus disorder prediction 1 21 - -
Glsi13g0249 144 MobiDBLite consensus disorder prediction 83 114 - -
Glsi13g0249 144 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Glsi13g0249 144 PANTHER DNA-BINDING DOMAIN 11 139 IPR044808 GO:0003700|GO:0009873
Glsi13g0249 144 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Glsi13g0249 144 FunFam Ethylene-responsive transcription factor 2 18 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0249 Glsi-ChrGlsi13 16767604 16768038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0249 20 141 AP2-EREBP Transcription Factor Family AT3G23230 54.918 1.59e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g0249 AP2 2.1e-12 CL0081