Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0240 ATGCTACACAATCTAAATTTCCCAGAAAAAGTACCATTACTTGTAATGTTTTCTCTTCATATTCAAAGATCTAGAACAACCCATTTCTCTGCATTTTCTGGAACACCTGGTATGGATTCTGTATCCAAAAGATTCTTGATCCATGGGTCAGAAGCTCTTTCACCCATTACAAGTCCTGGGAGTCCAATCTTTCATCCGCACGTTCATTCTTCAAGCACCAGTTTTCCCATTATAACAATCGCTGTAATAGGAATCTTCGCTACTGCTTTCTTACTCGTGAGCTACTATATCTTTGTGATCAAATGCTGTCTCAGTTGGCACCAAATCGATCTTCTGAGGCGTTTTTCTCCATCAAGGAGGCATGAAGATCCACTGGCTATGTCTGTGTACTCACCTGGAACAGAGCGTCGAGGACTTGAAGAGGCAGTGATTCGATTAATCCCAGTGATTCAATATAAAAAGTCTAAAGGAAACAGAGACTCCGGTGAGAGAAGCTTCTGTGAATGTGCAGTTTGCTTGAATGAGTTTCGAGAAGATGAGAAGCTGCGGATTATACCAAATTGCAGCCATGCCTTCCACATTGATTGCATCGATATTTGGCTTCAAAACAATGCCAATTGCCCACTTTGCAGAACAAGCATTTCCCAGATTGATCTGGCTCTCTCTCCAAGGCCGCCTTCTTCCCATCAAGATCGAAGCCCATATAGTGAAAATCCCATTGTGGGTGATGAAGATTTTGTTGTTATTGAATTGGGTAATGATCAGAACTTGCAACCAGAACCCGGAAAGTTGGAGCAGAGAATTGTGCAGAATAAAGCAAGGAAGCTTCAGAAAGTGACAAGCATGGGGGATGAGAGCATTAATGTTAGAGCCAAAGATGAACAGTTCTCAGTGCAACCCATTAGGAGGTCTTTTTCAATGGACTCATCTGGGGACAGACAATTCTATTTAGCAGTTCAAGAGGCTTTGCAGCAACAGAATAGACAAGCCACCTCCATTGAAGGAAGCATTAGTGGTAGTGGTAGAGCCAAGAGATTATCATTCTTTTCCTTTGGACACGGTGGTAGAACAAGAAGTGCAGTACTCCCTGTTTATTTGTACACCTAA 1107 0.4228 MLHNLNFPEKVPLLVMFSLHIQRSRTTHFSAFSGTPGMDSVSKRFLIHGSEALSPITSPGSPIFHPHVHSSSTSFPIITIAVIGIFATAFLLVSYYIFVIKCCLSWHQIDLLRRFSPSRRHEDPLAMSVYSPGTERRGLEEAVIRLIPVIQYKKSKGNRDSGERSFCECAVCLNEFREDEKLRIIPNCSHAFHIDCIDIWLQNNANCPLCRTSISQIDLALSPRPPSSHQDRSPYSENPIVGDEDFVVIELGNDQNLQPEPGKLEQRIVQNKARKLQKVTSMGDESINVRAKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALQQQNRQATSIEGSISGSGRAKRLSFFSFGHGGRTRSAVLPVYLYT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0240 368 SMART ring_2 169 210 IPR001841 -
Glsi13g0240 368 SUPERFAMILY RING/U-box 168 217 - -
Glsi13g0240 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 216 IPR013083 -
Glsi13g0240 368 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Glsi13g0240 368 PANTHER RING-H2 FINGER PROTEIN ATL16 62 364 IPR044600 GO:0016567|GO:0016740
Glsi13g0240 368 Pfam Ring finger domain 168 211 IPR001841 -
Glsi13g0240 368 CDD RING-H2_EL5-like 168 211 - -
Glsi13g0240 368 FunFam E3 ubiquitin-protein ligase ATL6 128 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0240 Glsi-ChrGlsi13 16005306 16006412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0240 66 366 C3H Transcription Factor Family AT1G04360 50.141 9.48e-97 291