Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0233 ATGGCGAGAGCTCCTTGCTGTGAAAAGATGGGGTTGAAAAAGGGTCCTTGGAATCCTGAGGAAGATCAAATCTTGATATCTTATATCCAGAAAAATGGCCATGGCAACTGGCGTGCCCTACCAAAACAAGCAGGTCTATTAAGATGTGGGAAGAGCTGCAGACTGCGCTGGATTAATTATTTACGGCCAGATATAAAGAGAGGGAATTTCACAAAAGAAGAGGAGGAAACTATCATTAAGCTGCATGAGATACTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCGGGAAGAACTGACAATGAGATAAAAAATGTGTGGCACACCCACTTGAAGAAGTTACTGAAAACAAGCCAACCCCGCCCAGATTCAAAAAAGGCCTCCAAACCAACAGTTAAAAGATCTAATTCCAATTCCAGTACAATAACAGCTCAATCAGAAGCTTCCAGTTTCAATCTTTCTGAGATGGACAGTACTTCAGCATGCACTTCTTCCAGTGATTTTTCATCAGTCACAGCTGAAGGAAGCAAAAGTATGATGGATATGAAGACCACCAAGAGTGAAGACATAGAACCTTTGGAGACAATAGTGCCTCAAATTGATGAAAGCTTTTGGTCAGAAGCACCCATGGATGAGAATGCCACAACCATTCCATCAAACTCTTTCACAATCTCAAACGAAGATTTCCAACAAAGTTATGGTTATAGTTCAAACTTTGATGATAGCATGGATTTCTGGTATGACTTGTTCATCAGATCAGGAGATTCAATAGAACTGCCAGAGTTCTGA 792 0.4129 MARAPCCEKMGLKKGPWNPEEDQILISYIQKNGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTKEEEETIIKLHEILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKLLKTSQPRPDSKKASKPTVKRSNSNSSTITAQSEASSFNLSEMDSTSACTSSSDFSSVTAEGSKSMMDMKTTKSEDIEPLETIVPQIDESFWSEAPMDENATTIPSNSFTISNEDFQQSYGYSSNFDDSMDFWYDLFIRSGDSIELPEF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0233 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g0233 263 CDD SANT 69 112 IPR001005 -
Glsi13g0233 263 Gene3D - 69 146 - -
Glsi13g0233 263 CDD SANT 16 61 IPR001005 -
Glsi13g0233 263 FunFam Myb transcription factor 11 67 - -
Glsi13g0233 263 MobiDBLite consensus disorder prediction 117 131 - -
Glsi13g0233 263 Gene3D - 13 66 - -
Glsi13g0233 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g0233 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi13g0233 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi13g0233 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Glsi13g0233 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g0233 263 MobiDBLite consensus disorder prediction 132 181 - -
Glsi13g0233 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Glsi13g0233 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi13g0233 263 SMART sant 66 114 IPR001005 -
Glsi13g0233 263 SMART sant 13 63 IPR001005 -
Glsi13g0233 263 MobiDBLite consensus disorder prediction 115 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0233 Glsi-ChrGlsi13 15453809 15456038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0233 1 263 MYB Transcription Factor Family AT2G31180 49.259 2.06e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g0233 Myb_DNA-binding 1e-13 CL0123