Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0227 ATGAACTCCTCCCCAGTTCACATAGATTCTTCCTCTTTTTTCCACTCATCCAGTGCTGATATCTCACCGCAATCCTCCTTTGAGTCGTCGCTGGAATCGTTCTCATGGAATTTCGAGAACGATCACTTCCCCTTCAATGAGAATGACCCTGAAGAGATGCTTCTCTTTGGCCTAATTTCAGGGGCAAACAGTGCCCAACAATCATTGGAGAGGAGCAGGGTGAAGGAAGAGGAGGTGAGCTCAGAGGAGAATGGAGCTAGCCCGAGGAAGGAGAAGACGTACCGAGGCGTCCGGAGGCGGCCGTGGGGGAAGTTTGCGGCCGAGATAAGGGATTCCACGAGGCATGGGATAAGAGTGTGGTTGGGGACATTTGACAGTGCAGAAGCAGCAGCTTTAGCTTATGATCAAGCTGCTTTTTCGATGAGGGGCTCTGCAGCAATACTCAACTTCCCAGTGGAGACGGTGAGGGAATCACTGAAGGGGATGAACTACAATGATTCCGAAGATGGATGTTCACCTGTGGTGGCCTTGAAGAGAAAACACTCCATGAGAAGGAAAATCAGCAATAAGAAGAGCAAAGACAGAGACTTTAGGATAGAGAATGTGGTGGTGTTAGAAGATCTAGGCGCAGATTACTTAGAACAGTTATTATTGTCCTCGGAGAATCCTTGA 672 0.4866 MNSSPVHIDSSSFFHSSSADISPQSSFESSLESFSWNFENDHFPFNENDPEEMLLFGLISGANSAQQSLERSRVKEEEVSSEENGASPRKEKTYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVETVRESLKGMNYNDSEDGCSPVVALKRKHSMRRKISNKKSKDRDFRIENVVVLEDLGADYLEQLLLSSENP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0227 223 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 CDD AP2 94 152 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 MobiDBLite consensus disorder prediction 70 92 - -
Glsi13g0227 223 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Glsi13g0227 223 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700|GO:0006355
Glsi13g0227 223 PANTHER DNA-BINDING DOMAIN 51 218 IPR044808 GO:0003700|GO:0009873
Glsi13g0227 223 MobiDBLite consensus disorder prediction 1 25 - -
Glsi13g0227 223 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Glsi13g0227 223 MobiDBLite consensus disorder prediction 67 94 - -
Glsi13g0227 223 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0227 Glsi-ChrGlsi13 13171791 13172462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0227 43 222 AP2-EREBP Transcription Factor Family AT3G23240 65.946 3.83e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g0227 AP2 1.3e-14 CL0081