Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0222 ATGGAGGCAGAACCTATCGCAGAAGGACAGATGATCGAGAAGGTCCGGTCACGAATTGGGTCCGAAGTTCCTGAACCGGTTGTTCTCCGAGCTCTTGCAGAATCTGGGTTTGACCCAGATGCAGCTGTGAAGTTCCTCAACTGTAATCCCGGCTTCTTGGTCCAACCCTTGACGGTGGTGCGTGCGAACACTAGCACTGGTGCTCGGGTTTTGGCCCCGATTAAGCAAGAGGAATTAGATGATTCGCAATCGTTCGTTGGAATGAATCTGAAGAGCAAAGTGAAAGAGGAAGTAGTTGATTTGGGGTTTGAGAATCCGGTGAAAGAAGAAATGGGTTCTGATGATTCTCTGCCATCCAAGTTAGATAACTCCGCGGTGGCACAGCCGGTCGAGGGGTTGAATATGAAGAATGAAGTCAATGTGAAGTTTGAGAAGCAGGATTCTGTGAGAGGAGAAATGAGTAGAGGTATTAGAGTTAAAGAACAAGCTGATAGGGTTACTAAGAAATTGGATTCTGTAGATAAGGTCTCCGTGAATGAAGAAGCTGTTACCTCTGACTGCAATGAGGTCGGAAGGCTTCCAATGGAATGGGCCAAATGTGTTATTCCCCTTGTGCGATCTTCAAAGGTTAAAGTTCTAGGCCGATGCATAGCTGCACCGCCTGTTCTACAAATGATGCAAGACATCATGTTGTACGTAAGGCTGGAAGCTTGTTCTAACATTGACTCTACTGTTTATCCTCTCCTTACATTGTTCAAATTGCTAGAAATTAAGCCATATCAAAAGGCTGAATTTACACCTGAGGAACTTGACTCTAGGAAGCGTTTGCTTGATTTGGAGGGCGATTCAGATGAAGCTGCATCAGTCTTGCCCATGAAACGGAGAAAGGGTTGCCAACAGAATCCAGAGCAAGACCAGGATGAACAAGTTGTTTCAGAGTCATCTCTGAATAATCTTGTTGGAGCTGCAGAAGTCTATGACTTGGAGGAGAAGGAACCGCCAAGCACACTGATGTGTGATCTAAGGCCTTACCAGAAACAAGCTCTGTATTGGATGTCAGAGTTAGAGAAAGGGGTTGATGTTGAGAATGCAGCAAATACTCTTCATCCTTGCTGGGCAGCCTTTAGTATAAGCGATGAAAGGGGATCCTCAATTTACCTGAACAACTTCACAGGGGAAGCAACAACGAAGTTTCCAACTGCAACACAGATGGCAAGAGGAGGAGTTTTAGCTGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTCTAATTCTTGCAAGACAAGGCAAGGGGAACTCAGAAAGCAAGGATGCAGAGAGTGCAAATAATACTGGTATTACAAGGAAGAGGAGGAAAGGTTCTCATACCAATACCTCATTTAAAGCAAGTGGTGGAACTCTTATTGTTTGTCCCATGGCGTTGTTAGGTCAATGGAAGGATGAGCTTGAAACCCATTCGGAGCCCGAAAGTATTTCCCTTTTTGTTCACTACGGTGGGGATAGAACCAATGATCCAGAGGATGGAGAAGACAGCATTTACCATAGGGTCAATTGGTACAGGGTGGTTCTAGACGAAGCTCATACCATCAAAGCCTCTAGAACCAACGTTGCTCAAGCTGCTTTTACTTTGACATCACACTGCCGCTGGTGTCTTACTGGAACCCCTCTTCAGAATAGTTTGGAAGATCTATTCAGCCTCTTGTGCTTCTTGCATGTTGAACCATGGTGCAACTGGGCATGGTGGAACAAGTTGATTCAAAGGCCCTATGAGAATGGCGATCCAAGAGGCCTGAAATTAGTCAAGGCCATTTTGAGGCCACTGATGTTGAGAAGAACGAAGGATACAAAGGATAAGGAGGGAAGGCCCATACTTGTTCTTCCACCAACTGACATTCAAGTAATTGAGTGTGAGCAGACAGAAGCTGAGTATGACTTCTATAATGCCCTCTTCAAGAGATCCAAAGTTCAATTTGACCAATATGTTGCACAAGGTAAGGTTCTTCACAACTATGCCAACATTCTTGAGCTACTATTGCGGTTGAGGCAGTGTTGTAACCATCCGTTTCTAGTAATGAGTCGAAGTGATTCACAGAAGTACGTGGACTTGGACAAACTCTCAAGACAATTTCTTGAGTCCAATTCTGACCCTTCTACAAAGCAGATTATCCCATCTCATGCATTCATTGAAGAGGTTATGAAAGGTATTCGCAAGGGTGAAAACATAGAGTGCCCCATATGCATGGAGTCTGCAGATGATCCTGTGTTCACACCATGTGCTCATAGGATGTGTAGGGAATGCCTACTCTCTAGCTGGAGGACCACAATAGGTGGGCCATGCCCCTTGTGTCGTCAGTTGCTAAAGAAAACTGATCTTATCACTTGTCCAACTGAAAATAAGTTCCGGGTAGATGTTCAGAAGGACTGGAAGGAGTCATCAAAGGTTTCAAAGCTTTTGGAATTCTTGAAACAGATTCAGTCATCACGCTCAGGTGAAAAAAGCATTGTCTTCAGCCAATGGACTTCATTTTTTGATCTCTTGGAGATTCCTTTAAAGAGGAGGGGAATTGGGTATTTGAGATTTGATGGGAAATTGGCACAAAAGCAGAGGGAAAGAGTTTTGAAGGAGTTTAACGAAACAAGAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGCGTGGGCTTGAACTTAACTGCGGCCTCAAATGTTTTCTTAATGGATCCGTGGTGGAATCCTGCAGTTGAGGAGCAAGCAATCATGAGAATTCATCGTATACGACAAAAGCGAACAGTTATTGTTAGAAGATTCATTGTCAAGGACACCGTGGAAGAACGCATGCTACAAGTGCAGCTGAAAAAGCAGAGGATGATATCTGGAGCCCTCACAGATGAGGAGCTTAGGTCTGCTAGGCTTGAGGAGCTCAAAATGCTCTTCAGATGA 2949 0.4446 MEAEPIAEGQMIEKVRSRIGSEVPEPVVLRALAESGFDPDAAVKFLNCNPGFLVQPLTVVRANTSTGARVLAPIKQEELDDSQSFVGMNLKSKVKEEVVDLGFENPVKEEMGSDDSLPSKLDNSAVAQPVEGLNMKNEVNVKFEKQDSVRGEMSRGIRVKEQADRVTKKLDSVDKVSVNEEAVTSDCNEVGRLPMEWAKCVIPLVRSSKVKVLGRCIAAPPVLQMMQDIMLYVRLEACSNIDSTVYPLLTLFKLLEIKPYQKAEFTPEELDSRKRLLDLEGDSDEAASVLPMKRRKGCQQNPEQDQDEQVVSESSLNNLVGAAEVYDLEEKEPPSTLMCDLRPYQKQALYWMSELEKGVDVENAANTLHPCWAAFSISDERGSSIYLNNFTGEATTKFPTATQMARGGVLADAMGLGKTVMTIALILARQGKGNSESKDAESANNTGITRKRRKGSHTNTSFKASGGTLIVCPMALLGQWKDELETHSEPESISLFVHYGGDRTNDPEDGEDSIYHRVNWYRVVLDEAHTIKASRTNVAQAAFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVEPWCNWAWWNKLIQRPYENGDPRGLKLVKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQVIECEQTEAEYDFYNALFKRSKVQFDQYVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRSDSQKYVDLDKLSRQFLESNSDPSTKQIIPSHAFIEEVMKGIRKGENIECPICMESADDPVFTPCAHRMCRECLLSSWRTTIGGPCPLCRQLLKKTDLITCPTENKFRVDVQKDWKESSKVSKLLEFLKQIQSSRSGEKSIVFSQWTSFFDLLEIPLKRRGIGYLRFDGKLAQKQRERVLKEFNETREKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIRQKRTVIVRRFIVKDTVEERMLQVQLKKQRMISGALTDEELRSARLEELKMLFR 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0222 982 Pfam HIRAN domain 150 233 IPR014905 GO:0003676|GO:0008270|GO:0016818
Glsi13g0222 982 Pfam Helicase conserved C-terminal domain 816 928 IPR001650 -
Glsi13g0222 982 CDD RING-HC 744 784 - -
Glsi13g0222 982 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 137 982 - -
Glsi13g0222 982 MobiDBLite consensus disorder prediction 434 462 - -
Glsi13g0222 982 Gene3D - 387 507 IPR038718 -
Glsi13g0222 982 Gene3D - 508 625 IPR038718 -
Glsi13g0222 982 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 818 982 IPR001650 -
Glsi13g0222 982 SMART ring_2 745 784 IPR001841 -
Glsi13g0222 982 ProSitePatterns Zinc finger RING-type signature. 760 769 IPR017907 -
Glsi13g0222 982 Pfam Zinc finger, C3HC4 type (RING finger) 745 784 IPR018957 GO:0046872
Glsi13g0222 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 974 IPR027417 -
Glsi13g0222 982 SUPERFAMILY RING/U-box 741 795 - -
Glsi13g0222 982 SMART ultradead3 337 592 IPR014001 -
Glsi13g0222 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 613 IPR027417 -
Glsi13g0222 982 SMART helicmild6 846 929 IPR001650 -
Glsi13g0222 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 809 IPR013083 -
Glsi13g0222 982 CDD DEXDc_SHPRH-like 341 613 - -
Glsi13g0222 982 Pfam SNF2-related domain 344 691 IPR000330 GO:0005524|GO:0140658
Glsi13g0222 982 ProSiteProfiles Zinc finger RING-type profile. 745 785 IPR001841 -
Glsi13g0222 982 CDD SF2_C_SNF 813 940 - -
Glsi13g0222 982 Gene3D - 629 982 IPR027417 -
Glsi13g0222 982 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 575 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0222 Glsi-ChrGlsi13 12596876 12603321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0222 184 982 RAD5 or RAD16-like Gene Family AT5G43530 70.167 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi13g0222 SNF2_N 2.6e-42 CL0023