Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0190 ATGAAGGAGCCCCAGAATACAACCAATGAGAACCATAAAAAACAAGAAGCTCACCCAGCACCAGGAGCAGAAACAGAACAAAATAAGAAAAGGCCGAGCCTAGTAGAAATAGACAGGCACTCCAAGCACACAGAAAAGAAACGCTTCACAAGAGAGATGCGGTGCTATGGTTTAACTATCCCAGGAAGCGATTCTCGCTTCTTCTGCCTCCCCGCCACAAAACCCTCATCCCTTTCTGCCAACAGATCCAAACCCATCAAATTCCCCACTCCAGTTGGTTTCGCTTCCCTCAAAGTTAAAGCTGCTATTAACGATGGGTTGGTGATAGATGCCCCTAAATTGAGCTTCTACGACCTTCTGGGTATACCCGAATCTGGGTCCTTACCCGAGATAAAGCAGGCTTACAAGCAGCTTGCCCGCAAGTATCACCCGGATGTGTCACCTCCGGATCGGGTTGAAGAGTATACCAAAAGGTTTATTCAAGTTCAGGAGGCCTATGAGACCTTGTCTGATCCAGGAAGCAGAGCCATGTATGACAGAGACATGGCCAGGGGGATTGAATTGGCGTTCTCTGCTCGAAGACGGTATTACGACGATGAGATGATTGAACCGAAAAGCGAATGGAAAGCTCATTGGCAGACTCAGCTGTCAGAGCTGAATAGAAGAAGTAAGTACAAAGATACTGGAGAAAACATGTCATGGGCAGCTCGAATGCGACGGAAGAGGAATGAATCATCAAATGAATTGTAA 750 0.4693 MKEPQNTTNENHKKQEAHPAPGAETEQNKKRPSLVEIDRHSKHTEKKRFTREMRCYGLTIPGSDSRFFCLPATKPSSLSANRSKPIKFPTPVGFASLKVKAAINDGLVIDAPKLSFYDLLGIPESGSLPEIKQAYKQLARKYHPDVSPPDRVEEYTKRFIQVQEAYETLSDPGSRAMYDRDMARGIELAFSARRRYYDDEMIEPKSEWKAHWQTQLSELNRRSKYKDTGENMSWAARMRRKRNESSNEL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0190 249 CDD DnaJ 116 171 IPR001623 -
Glsi13g0190 249 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 111 246 - -
Glsi13g0190 249 SMART dnaj_3 114 174 IPR001623 -
Glsi13g0190 249 Pfam DnaJ domain 116 179 IPR001623 -
Glsi13g0190 249 PRINTS DnaJ domain signature 117 135 IPR001623 -
Glsi13g0190 249 PRINTS DnaJ domain signature 154 174 IPR001623 -
Glsi13g0190 249 PRINTS DnaJ domain signature 135 150 IPR001623 -
Glsi13g0190 249 ProSiteProfiles dnaJ domain profile. 115 182 IPR001623 -
Glsi13g0190 249 ProSitePatterns Nt-dnaJ domain signature. 159 178 IPR018253 -
Glsi13g0190 249 FunFam Chaperone protein dnaJ 20, chloroplastic 101 210 - -
Glsi13g0190 249 SUPERFAMILY Chaperone J-domain 112 186 IPR036869 -
Glsi13g0190 249 MobiDBLite consensus disorder prediction 1 46 - -
Glsi13g0190 249 Gene3D DnaJ domain 108 202 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0190 Glsi-ChrGlsi13 10004303 10008212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0190 111 179 C2H2 Transcription Factor Family AT1G74250 40.278 4.54e-07 48.5