Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0188 ATGGAGAAGTGTTCTTTGCCATTGAATTACGTAAAAAGCAACACCCATGAAACTAAAAAGAAGCTTTTACCGGGAAAGGAAGCTTTGGTGAAGCTTTTGAGATGGCATTTTGGATACCCTGATTTTAGGGGCAACCAATTGGAGGCTATTCAAGCTGTACTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCATTATGTTACCAGATCCCTGCATTGGCTAAAACAGGAATTGTTCTTGTTATTTGTCCTTTAATAGCGTTGATGGAAAACCAAGTGATGTCATTGAAGGAGAAAGGCATTGCTGCAGAATTTCTTTCCTCAACCCAAACAGTGGATGCAAAAAATAAGATTCACGAGGACCTTGGTTCTGGAAAACCTTCTGTAAGGCTGTTATATGTCACTCCAGAATTGATAGCAACACTGGGGTTTATGTCAAAGCTGAGAAAGATTTATGCCAGAGGGTTGTTAAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCCCTTAGAAGCCACCTTCCAGATGTGCCAATGTTAGCTCTGACTGCTACTGCTGTTCCCAAGGTCCAGAAAGATGTGGTAAAATCCCTGGCCATGCAAAATCCATTGATACTAAAATCCTCTTTTAATCGTCCTAATATATATTACGAAGTTCGATACAAAGATCTTTTGGATGATGCTTATGCTGATTTGTCTAATATGCTCAAATCTAAGGGGGATGTCTGTGCAATAGTTTACTGCCTTGAGCGTTCAACTTGTGATAACCTGTCACTTCATCTATCCCAAAATGGCATTTCCTGTGCTGCTTATCATGCTGGGTTGAATAATAAAATGCGAACTTCTGTATTAGATGATTGGATTTCATCTAAGACGCAAGTCGTTGTTGCCACTGTCGCTTTTGGTTCATACAATTTGCTATTAATGGTTTATGATCATATTCACCAGGGAATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTTAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCAGGAAGAGCAGGTCGTGATCAGCTGCCTTCTACAAGTCTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAGTTTATATTAAGTAATTCTGGGAGCAAGAAGCTACAGTCGTCTAGCTCGTTAGAAGAATCACCCAAAAGGTCCCTTACTGATTTCAATCAGATGGTTGAATACTGTGAAGGTTCTGGATGTCGTAGGAAAAAGATTATTGAGAGTTTTGGGGAGCAGATAACTGTATCACTATGTGGAAAGTCATGTGATGCCTGCAGACATCCGAACTTAGTTGCTAGATGTTTGGAGGATCTCAAAACTGCCTGTTCTCTATGCCAGAAAAATGGTTCCTCTCGAGTCTTTATCACCAGTTCCATAGGTGCCGTTGATCAAGAACAAGCATCTGAATTCTGGAATCGTGATGAAGAAGCAGCTGGATCAGAGGAAGACATATCTGGTTCAGATGATGGTAATGAGGTTGTCAACAACCTAGCCATACCAAAGTTAAAGCCCAGGTTGGGAGTGAATGACAAGATTGCATTGTTGCAACATGCAGAAGAAAACTTCTATAGAAATGAAAACGCCAAAAAACAGAGAAACAAAGTTGACAAGAGTACTATATCTGATACAATGAGAGGAGCAAGCAGAGAAAAACTGCAAAATGCTCTAAAGCAGGCTCAGCAACGACTTGACAACTTAAAGATTGATGTGGATGCATCAGCATCATTTTTCGAAGATGAATGCTACAAGAAATATTGCAAGGCTGGCAAATCATTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTTTCAACCACAAATTCAATTGATCTGATACACCGCCTTGGTGTAAATAATGCTTCCCCATCGATTGTATCGTTTGAAGATAAGCGTCCCCTTGAGACACAAGATCCTTGTGCAAAAGAAGCCACTAGCCATGAACCGTCTGCCAATGCTAAATCAGAAACTTCACGAGGTTCTTTGTCAGTAGAAAACTCTTCCTCTAATACGATGTTGCCGCCAATTCCTTCCTTCTCCGAGTTTGTTAATAGTAGGAAGACAGAAGGTGACCAAACAAATACCACACAAAAGCATTCACCAAGACTAGAGAAAAGGATGAGGGTACGCTAG 2214 0.4065 MEKCSLPLNYVKSNTHETKKKLLPGKEALVKLLRWHFGYPDFRGNQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALAKTGIVLVICPLIALMENQVMSLKEKGIAAEFLSSTQTVDAKNKIHEDLGSGKPSVRLLYVTPELIATLGFMSKLRKIYARGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRSHLPDVPMLALTATAVPKVQKDVVKSLAMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNMLKSKGDVCAIVYCLERSTCDNLSLHLSQNGISCAAYHAGLNNKMRTSVLDDWISSKTQVVVATVAFGSYNLLLMVYDHIHQGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGSKKLQSSSSLEESPKRSLTDFNQMVEYCEGSGCRRKKIIESFGEQITVSLCGKSCDACRHPNLVARCLEDLKTACSLCQKNGSSRVFITSSIGAVDQEQASEFWNRDEEAAGSEEDISGSDDGNEVVNNLAIPKLKPRLGVNDKIALLQHAEENFYRNENAKKQRNKVDKSTISDTMRGASREKLQNALKQAQQRLDNLKIDVDASASFFEDECYKKYCKAGKSFYYSQVASTVRWLSTTNSIDLIHRLGVNNASPSIVSFEDKRPLETQDPCAKEATSHEPSANAKSETSRGSLSVENSSSNTMLPPIPSFSEFVNSRKTEGDQTNTTQKHSPRLEKRMRVR 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0188 737 Pfam DEAD/DEAH box helicase 46 211 IPR011545 GO:0003676|GO:0005524
Glsi13g0188 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 389 IPR027417 -
Glsi13g0188 737 Coils Coil 576 596 - -
Glsi13g0188 737 NCBIfam RecQ family ATP-dependent DNA helicase 32 456 IPR004589 GO:0004386|GO:0006310
Glsi13g0188 737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 409 IPR001650 -
Glsi13g0188 737 MobiDBLite consensus disorder prediction 675 724 - -
Glsi13g0188 737 FunFam ATP-dependent DNA helicase 24 231 - -
Glsi13g0188 737 CDD SF2_C_RecQ 232 378 - -
Glsi13g0188 737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 224 IPR014001 -
Glsi13g0188 737 FunFam RecQ family DNA helicase 232 470 - -
Glsi13g0188 737 MobiDBLite consensus disorder prediction 656 737 - -
Glsi13g0188 737 SMART ultradead3 38 240 IPR014001 -
Glsi13g0188 737 CDD DEXHc_RecQ 31 231 - -
Glsi13g0188 737 PANTHER DNA HELICASE RECQ FAMILY MEMBER 17 620 - -
Glsi13g0188 737 Pfam RecQ zinc-binding 382 453 IPR032284 -
Glsi13g0188 737 Gene3D - 232 471 IPR027417 -
Glsi13g0188 737 SMART helicmild6 275 369 IPR001650 -
Glsi13g0188 737 Pfam Helicase conserved C-terminal domain 250 367 IPR001650 -
Glsi13g0188 737 Gene3D - 5 231 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0188 Glsi-ChrGlsi13 9901432 9912249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0188 35 384 Eukaryotic Initiation Factors Gene Family AT3G19760 20.548 3.27e-11 63.9