Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0177 ATGGTTCTGAGTATCCGAATTTTCAGTGCTCATATTATTAATTTCTGTGTGCTGCTTAGTTGTGGCATAACCTATGGGACTGAAACTGATATCCACTGCTTGAGGAGAATAAAAGATTCACTCGAGGACCCATATGGTTATTTGAAGTCTTCCTGGAATTTCAACAACAACACAGAAGGATTTATCTGTAGGTTTACTGGGGTTGAATGTTGGCACCCTGATGAGAACAGAGTCTTAAATCTCAAGCTGTCAAATATGGGACTCAAGGGCCAGTTTCCTCGTGGTATTGAAAATTGCTCAAGCTTAACAGGATTAGATCTTTCAATTAACAAACTGTCTGGATCCATTCCAGCAGATATCAATGTCCTTCTTCAATTCGTGACAACGCTTGATCTATCTTCAAATGATTTTTCTGGGCAGATTCCTGTGGGCCTTGCAAATTGTACTTATCTTAACTCCCTTAAACTTGACCAAAATCGACTCACTGGTCAAATTCCTGCAGAATTTGGCCTGCTCTCCCGGCTTAAGGCATTTAGTGTCACCAACAATCTTTTGACAGGGGCAGTTCCAACTATCAAAGACATTACAGCAGATAGTTATGCAAATAATCGTGGACTCTGTGGTGGCCCCTTGGCTCCTTGCCAGGCCAAGTCTTCCAAGAGTAATACTGCAGTTATAGCTGGAGCAGCAGTTGGAGGGGTGGCAGTTGCAGCATTAGGATTAGGTATTGGATTGTTCTTCTATGTGCGCCGAGTTTCTGTGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGTCTAAAGGGAACTAAAGCAATAAAGGTTTCAATGTTTGAGAAGTCAGTTTCAAAGATGAAATTGAGTGATCTCATGAAGGCTACTAATAACTTCAGTAAAGGCAATATTATTGGGTCAGGAAGAACAGGAACTGTGTACAAAGCTGTCCTTGATGACGGCACATCACTCATGGTCAAGAGATTGCAGGAATCTCAACACTCGGAGAAAGAATTTCTTTCTGAGATGGCTACACTAGGGACTGTCAGACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGCGTGGCCAAGCAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGAACTCTTCATGATCACCTACATCCTGCTGATGGTCAGAGCACTATGGAGTGGCCTTTAAGGCTTAAAATTGCAATTGGGGCAGCCAAAGGAATAGCATGGCTTCATCATACCTGCAATCCCCGTATTATTCACCGAAATATAAGCTCTAAGTGCATCTTGTTGGATGCAGATTTTGAGCCCAGAATCTCTGATTTTGGCCTTGCTAGACTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTATACAAGAACATTGGTGGCTACACCCAAGGGGGATGTTTATAGCTTTGGAACTGTGCTTCTTGAGTTAGTGACTGGTGAAAGACCTACCCATGTGGCTAAAGCTCCAGAAACGTTTAAAGGTAATTTAGTAGAATGGATAACGCAACTCTCGAGCAGTTCTCAACTCCAGGATGCCATTGATGAGTCATTGGTTGGGAAGGGTGATGATAGTGAGCTTTTCCAATTTCTTAAGGTTGCATGTAACTGTGTTTTACCAAATCCAAAGGAAAGACCTACTTTGTTTGAAGTATACCAGCTTCTAAGAGCCGTTGGGGGTAGATACAATTTGACAACTGAGGATGACATCTTGGTACCTGCAGATATTGGTGATGCTGATAATTTAGAGGAACTTATAGTAGCTCGAGAAGGAAATGATTGA 1836 0.4205 MVLSIRIFSAHIINFCVLLSCGITYGTETDIHCLRRIKDSLEDPYGYLKSSWNFNNNTEGFICRFTGVECWHPDENRVLNLKLSNMGLKGQFPRGIENCSSLTGLDLSINKLSGSIPADINVLLQFVTTLDLSSNDFSGQIPVGLANCTYLNSLKLDQNRLTGQIPAEFGLLSRLKAFSVTNNLLTGAVPTIKDITADSYANNRGLCGGPLAPCQAKSSKSNTAVIAGAAVGGVAVAALGLGIGLFFYVRRVSVKKEEDPEGNKWARSLKGTKAIKVSMFEKSVSKMKLSDLMKATNNFSKGNIIGSGRTGTVYKAVLDDGTSLMVKRLQESQHSEKEFLSEMATLGTVRHRNLVPLLGFCVAKQERLLVYKNMPNGTLHDHLHPADGQSTMEWPLRLKIAIGAAKGIAWLHHTCNPRIIHRNISSKCILLDADFEPRISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWITQLSSSSQLQDAIDESLVGKGDDSELFQFLKVACNCVLPNPKERPTLFEVYQLLRAVGGRYNLTTEDDILVPADIGDADNLEELIVAREGND 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0177 611 Gene3D Phosphorylase Kinase; domain 1 260 372 - -
Glsi13g0177 611 Gene3D Transferase(Phosphotransferase) domain 1 374 588 - -
Glsi13g0177 611 CDD STKc_IRAK 305 573 - -
Glsi13g0177 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 190 - -
Glsi13g0177 611 FunFam Nuclear pore complex protein NUP107 27 191 - -
Glsi13g0177 611 Pfam Protein kinase domain 300 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0177 611 SUPERFAMILY Protein kinase-like (PK-like) 277 573 IPR011009 -
Glsi13g0177 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 374 586 - -
Glsi13g0177 611 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Glsi13g0177 611 ProSiteProfiles Protein kinase domain profile. 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0177 611 SUPERFAMILY L domain-like 28 190 - -
Glsi13g0177 611 Gene3D Ribonuclease Inhibitor 27 216 IPR032675 -
Glsi13g0177 611 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Glsi13g0177 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 260 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0177 Glsi-ChrGlsi13 9386670 9389586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0177 12 587 Receptor kinase-like Gene Family AT3G28450 47.700 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Glsi13g0177 Pkinase 5.7e-38 CL0016