Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0171 ATGCAATTTCTCAAATTATACCCTACTTTTTCATTTTCTCCTTGGAATAATTTGTTCTCTAACTCTTCCAGATCCATTCTTTCTCTGTTCTCCACTGTTTCTTCACCAACCCAAGCCTTACAGGAAACCATTTTCATCATTGATTACCTAAGTAGCAACTTCAAATTCTCCAAAACTCAGTCCATCTATATCTCAAAACGTGTTTTACGGGCTAGATGCCCTCAAAACCCCTTGTCTGTGCTGAAATATTTTAAACTGATTGGATTTTCTGAAGCCCAGATTCAATCTATGATTTGCCGAATACCCCAAATACTGTTTTCAGATATTGATAAAACGCTGAAGCCAAAAATTGAGTTCTTTCAACTACTCGGTTTTGAGGGTTCTGAATTGGCAAAGTTTCTCTCCAGGAATTCAACTGTTTTGACTCACAGTCTGCATAAAAATTTGGTCCCCTCTGTGGAGATTATTAGGAAAATTGTGTACAACGAGAAAGATTTTATTCAAGTGTTGCAGAGATCTGGCTGGATTCTCGCAAAGTACCAAAAGATTTTGAGCAATATTGCCTTCTTTGAGAGTTGTGGGATCACTGGGTCTCAGCTTTCACTGTTATTCAAACGACAGTCTTGGCTTTTCAATGCACCAGAGTCTTTGCTTAGAAACCTTGTTTCACGTGCTCTAGACATGGGTTTCCATTTAAATTCAAGAATGTTGGTCCATGCACTCCATACAATCAGTAGTTTGAGCATTAAAACGTTTAGGAGAAAGCTGGAGTTACTTCAGAGTTTTGGGTTTTCTACAGATGAGAGCATGCAAATGTTCAGAAGAGCTCCGACCTTGCTCAGAACATCTGAAAAGAAAATAAAGTTGGGAATTGAATTCTTCTTGGATACAGTCATGCTGCCAAAGTCAGTGCTGGTTCGTAAGCCTACAATTTTGATGTTTTCTATGGAGGATAGGGTGATTCCTCGATACAGGGTTTTGCAGCTGTTAATATCAAAAAGCGTATTTAAGAAGGATCTGAGTTTCATTAGTGTGTTATATTTGCCGGAGGAGATTTTCTTGGATAAGTATATTTCACAGTTTACTGATAATGCTGAGGCATTATTGGTGGCTTACAAGGGTCACCATCTGGAAGCTGCCTCTACATAA 1149 0.3856 MQFLKLYPTFSFSPWNNLFSNSSRSILSLFSTVSSPTQALQETIFIIDYLSSNFKFSKTQSIYISKRVLRARCPQNPLSVLKYFKLIGFSEAQIQSMICRIPQILFSDIDKTLKPKIEFFQLLGFEGSELAKFLSRNSTVLTHSLHKNLVPSVEIIRKIVYNEKDFIQVLQRSGWILAKYQKILSNIAFFESCGITGSQLSLLFKRQSWLFNAPESLLRNLVSRALDMGFHLNSRMLVHALHTISSLSIKTFRRKLELLQSFGFSTDESMQMFRRAPTLLRTSEKKIKLGIEFFLDTVMLPKSVLVRKPTILMFSMEDRVIPRYRVLQLLISKSVFKKDLSFISVLYLPEEIFLDKYISQFTDNAEALLVAYKGHHLEAAST 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0171 382 SMART mt_12 235 265 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 167 196 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 Gene3D Transcription termination factor 3, mitochondrial 146 363 IPR038538 -
Glsi13g0171 382 FunFam Mitochondrial transcription termination factor-like 145 365 - -
Glsi13g0171 382 PANTHER CGI-12 PROTEIN-RELATED 46 360 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 Pfam mTERF 179 353 IPR003690 GO:0003690|GO:0006355
Glsi13g0171 382 Pfam mTERF 81 207 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0171 Glsi-ChrGlsi13 9217491 9218639 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Glsi13g0171 mTERF 6.8e-17 No_clan