Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0144 ATGACTTCATCTTTGGAGCAACTCCTGGCAGAGGAAGGGTTCAAAGGAAACAGAAAAATCACAAGGTCGAGATCTTCCTTCCATGCTAATGTGGTAAATATGCCTCATTACCCTTTCAAAGACCAACAAAAGATACTTTCTTTGTCAGATGAAAGAATTAAAACTGAGAGAACAAAGTCTGATGTCTCTCAATATCATATTAGAAGTAAATTGTTGAATAGGGATATTGCTAAGAGCTGGAGACCAAGGGATAATATTTCTGAGAGAAAGAAAATGGATGAAGGATTGAAGAAAAAAAATGAGGAGAAATCTTCCAGCGATACAAAAGTAAGTAAAGGAGCTCATACCGAATCTTCAGAACACATGCCAATAAATGAGATAATTGAGGTGGATGAGCGAGAAGGTTACACAGTTAAAGATATATATTCCAATGGAGTATTTAATGCAAAGAGAGGGAAAGAAAAGAATTTCAATGAATTTAGGGATAGGGAGAAATTGCAAGGGATGTCTGTCAAGGACGCAAAGGTGGATAAGAGGCAAGGCAGTAGTTCCAGTACACATATGGTTGGACACTTCATTGGAAATACAGTGAAGAATATAAAGCAACTGGAGAAGTCACACAACAGAGCAAATAGCAAAAGTTTCCAAGATAGTTATGATAAAATTCATGAGCATGCCATGCAAACACCTTCTGATCTTGCTCTTAATGAAGTTGCTGTCCAAGCAGTTGTTTCCATTCTAAATGGATATATTAAACGCTTTCTAAAGGATGAAAATTTTCGAACTACACTGCGGCACAATTGTTTCTCCTCCTTGAATTTTATTGAACTAGAAGAAGAGAAAAGTACTGGGGCCAAAGTAGTAAGACGTCTTGAACAAGCAATTGAGACAATAAACCAAGCTGCTGAGGATTCTTTGTCTGACAAAGATTTGAAAAGAGCGTCTTTGCAGCTTAGCTTTATTACAGGTTTATGTTTAAATGATTTGAAGTATGGGCTTACATGTGGGATTCCAAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATATAAGATACAGAGAAAGGATAAGGTATCAGCAATGCATCTTTTGCAAGTATTTTGTGATTCACCTTCTCAGGCAAGGACTACATTATTGCCTGAACTGTGGGAGTACTTATTTTCTCCAAATCTTTCTCATTTGAAGGCATGGTACAAAAAGGAAGCTGATATTCTAGCGGATACACCAAGCAGAACAAGAAAATTGGAGTGTCTTGGAAAAGTGTATAATGAACAATTGGATTTTGGGACTCATTCATTTGCTGTATACTACAAAGACTGGCTCACTGCAGGAGCAGAAGCTCCATCAATTCCTTCTATCAAAGCTCCATCAATATCTGCTACGGAAAGTGAGCAGGGAAGTTCTCTCGGTCATTCTTCAGAGCTTGCTACGTCCATCGACTCGTTCTCACCACAACTAATGGTCAGCAAAAAGCTATATGATTCTGTCTTTGGTAGCTTGAGTAAACCTGGAGTTGATGAAGATGAACATACTACAATGGAAGATAACCTAGATAATTGCAGTACCGGCTCATATGTTTCACCTTATGTTAAGAAAACATCAACATATGCATCTGAAATGGTTAAATATACAGATCAAGATATTGAAGAAGATTTTACAAAGACGGTGCCAGTTGTTGCATTTCAACCTCAGAAAGGAACCTCAAGTACAGCTGAAGAATGGAGAGAAAAAAATCTCAGTAACGAGATTGGTAACTCTTTCATTTCATTACACACTAATGTAAACAGCGTCCTACTAGATGCTCTACCGCATGTAAAAGCGAATGAAATCACTTTTAGAGAGGTAGGAAGCTCTGTTCTGGAAACGCGAAACAGCAAAAGCTCTTTTGATCCCATTGTTTGTACTATTTCACCTTCCAGTGAGGAATCAGTTTCCAACTCAGTTGTAAATCCAACCCAGATTAGTTATTCTCTTAAAGGATTGTGCTTTCCAACTATTCCAAAGGAATTCATTTGTCCTCTGACTGGAACTTTATTTGAGGAACCAACTACCCTAGAGAATGGTCAAACCTTCGAACGAGCAGCCATTAAGGCATGGTTTAAAAGGGGAAACAGAACATGCCCGGTATCGGGAAATAGTTTAGATTGTGTGACCATGCCATTAACCAACCTTGTTTTGAAACGTCTGGTTGATAATTGGAAGTCAGAACAATTTAGTCGCCTCCTGGATTTTGCTTCTCAAATTGTTGAAAACTCAAGAAGCCATAAGTTGAAGTATGATGAGGCTGCTGTTTTTAATCTAGAGAGTCATTTTACTTCTTTGAATGAAGAGGAAAAATCAACTTATGCCAAGCAGCTCATCTCCCTAGGGCTTCTATCATTTCTTTGTAGGAGGTTTGAATTAGGAAATGTGCAAGAGAAAACACATGTGGTGGCACTTCTGCTAAATTGCATTGAGGCAGACTCTAGTTGCATATATCAGATAGCAAGAAATATTGACAAAAAATGTCTTATGGAGGTTCTTCACAGCAAGGAGGTTACCCAAAGAACAAATGCAAGATTATTACTTACTGAACTTTTATCTCTGAAGAGGTGA 2607 0.3805 MTSSLEQLLAEEGFKGNRKITRSRSSFHANVVNMPHYPFKDQQKILSLSDERIKTERTKSDVSQYHIRSKLLNRDIAKSWRPRDNISERKKMDEGLKKKNEEKSSSDTKVSKGAHTESSEHMPINEIIEVDEREGYTVKDIYSNGVFNAKRGKEKNFNEFRDREKLQGMSVKDAKVDKRQGSSSSTHMVGHFIGNTVKNIKQLEKSHNRANSKSFQDSYDKIHEHAMQTPSDLALNEVAVQAVVSILNGYIKRFLKDENFRTTLRHNCFSSLNFIELEEEKSTGAKVVRRLEQAIETINQAAEDSLSDKDLKRASLQLSFITGLCLNDLKYGLTCGIPNYKLSACAHLYLSVVYKIQRKDKVSAMHLLQVFCDSPSQARTTLLPELWEYLFSPNLSHLKAWYKKEADILADTPSRTRKLECLGKVYNEQLDFGTHSFAVYYKDWLTAGAEAPSIPSIKAPSISATESEQGSSLGHSSELATSIDSFSPQLMVSKKLYDSVFGSLSKPGVDEDEHTTMEDNLDNCSTGSYVSPYVKKTSTYASEMVKYTDQDIEEDFTKTVPVVAFQPQKGTSSTAEEWREKNLSNEIGNSFISLHTNVNSVLLDALPHVKANEITFREVGSSVLETRNSKSSFDPIVCTISPSSEESVSNSVVNPTQISYSLKGLCFPTIPKEFICPLTGTLFEEPTTLENGQTFERAAIKAWFKRGNRTCPVSGNSLDCVTMPLTNLVLKRLVDNWKSEQFSRLLDFASQIVENSRSHKLKYDEAAVFNLESHFTSLNEEEKSTYAKQLISLGLLSFLCRRFELGNVQEKTHVVALLLNCIEADSSCIYQIARNIDKKCLMEVLHSKEVTQRTNARLLLTELLSLKR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0144 868 Coils Coil 288 308 - -
Glsi13g0144 868 CDD RING-Ubox_PUB 671 730 IPR045210 -
Glsi13g0144 868 PANTHER OS04G0584500 PROTEIN 1 868 - -
Glsi13g0144 868 MobiDBLite consensus disorder prediction 83 124 - -
Glsi13g0144 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 744 IPR013083 -
Glsi13g0144 868 SUPERFAMILY RING/U-box 667 740 - -
Glsi13g0144 868 Pfam U-box domain 670 741 IPR003613 GO:0004842|GO:0016567
Glsi13g0144 868 ProSiteProfiles U-box domain profile. 669 744 IPR003613 GO:0004842|GO:0016567
Glsi13g0144 868 SMART Ubox_2 673 737 IPR003613 GO:0004842|GO:0016567
Glsi13g0144 868 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0144 Glsi-ChrGlsi13 7853751 7857706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0144 669 866 U-box Gene Family AT5G37490 25.806 2.07e-12 68.2