Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0140 ATGGACCTTGGAGGAGTTCGAAAGAGGGGAAGGCCTGAAGCTCCCTTCAATGGCAATGGCGGCGTGAAGAAATCTAGGCCAGAAACGGAGTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGATGCCATTTCTTGCATTATGTTCCTGGTGGCATAAAAGCTGTCTCTCAGATGAGTAATGTTGGTACCAATCCTTCACTTCCACAGGCTAGTAGAAATCCAACTGTTCCACCATCCTTCCCAGATGGCTCCTCTCCTCCAGCTGTAAAAACCCGATTGTGTAACAAGTATAATACCGCTGAAGGTTGCAAATTTGGTGATAAATGCCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAGCCTACAGTCCCTTCATATGAAGATTCTCGTTCCTTGGGACAAATGCAAAGCAGGGTTGGTGTGCGGCTTGAGCCCCCGCCTCCAGCCCACGGGGTTGCAGCTAGCTTTGGAGCTTCTGCTACTGCTAAGATTAGTATCAATGCTTCGCTTGCTGGTGCTATTATTGGAAAAAATGGTGTCAACTCTAAGCAAATTTGTCGTGTGACTGGAGCAAAACTTTCTATCAGGGAACATGACTCAGATCCTAATCTCAAGAACATTGAGCTTGAGGGTAGTTTTGATCAGATCAAACAAGCTAGTGCTATGGTTCGGGAACTTATTGTAAATGTTGGTTCTGTCTCTGGCCCTCCAGTGAAAAACATTGCCGCACATGCTTCTGCCCCAGCTAACAATTTCAAGACTAAACTTTGTGAAAACTTCGCCAAAGGATCCTGCACATTTGGGGAAAGGTGCCACTTTGCACACGGAGCTGATGAATTACGCAAACCTGGAATGTGA 906 0.4669 MDLGGVRKRGRPEAPFNGNGGVKKSRPETESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMSNVGTNPSLPQASRNPTVPPSFPDGSSPPAVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPTVPSYEDSRSLGQMQSRVGVRLEPPPPAHGVAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIKQASAMVRELIVNVGSVSGPPVKNIAAHASAPANNFKTKLCENFAKGSCTFGERCHFAHGADELRKPGM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0140 301 FunFam Zinc finger CCCH domain-containing protein 262 298 - -
Glsi13g0140 301 SUPERFAMILY CCCH zinc finger 267 297 IPR036855 GO:0046872
Glsi13g0140 301 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
Glsi13g0140 301 Pfam KH domain 178 241 IPR004088 GO:0003723
Glsi13g0140 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Glsi13g0140 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Glsi13g0140 301 MobiDBLite consensus disorder prediction 1 39 - -
Glsi13g0140 301 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Glsi13g0140 301 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Glsi13g0140 301 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Glsi13g0140 301 Gene3D - 263 298 - -
Glsi13g0140 301 Gene3D - 99 136 - -
Glsi13g0140 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 141 IPR045877 GO:0003729
Glsi13g0140 301 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Glsi13g0140 301 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Glsi13g0140 301 CDD KH-I_AtC3H36_like 178 243 - -
Glsi13g0140 301 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Glsi13g0140 301 MobiDBLite consensus disorder prediction 75 101 - -
Glsi13g0140 301 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Glsi13g0140 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 246 IPR036612 GO:0003723
Glsi13g0140 301 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Glsi13g0140 301 ProSiteProfiles Type-1 KH domain profile. 175 239 - -
Glsi13g0140 301 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Glsi13g0140 301 Gene3D K Homology domain, type 1 171 262 IPR036612 GO:0003723
Glsi13g0140 301 SMART kh_6 174 244 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0140 Glsi-ChrGlsi13 7689810 7703490 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi13g0140 KH_1 8.2e-11 CL0007